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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0059400 |
| Transcript ID | LotjaGi1g1v0059400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein restricted tev movement 2; TAIR: AT2G27140.1 HSP20-like chaperones superfamily protein; Swiss-Prot: sp|D5K211|RTM2A_ARATH Inactive protein RESTRICTED TEV MOVEMENT 2; TrEMBL-Plants: tr|I3T6E1|I3T6E1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0059400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8302114..8305198) extracted from Lotus japonicus Gifu genome v1.2.
AGATGACTTCGAGACAAGCACAACATGAATTTCACCTTTCCTAAGCTGCTACAATATGTCTTGTGCCACAGGGGGAAACT GTAATTTTGTCAGGATAAAGATTTGCACAAAGAACAAATTTTTGCTTTTTAGTTAGAATTACCAAGGCACAGGGTCACCT CTTCTGTTGCCAAAGCATATTATTTTTCTTGCACCATACAGAGACTAAGTCTCAAACCCATCAATAGCATAATGTTTGCA CGAAAAGAAAGTAATAACATACAATAACAAGATGGTAAAGATCATCAATGACAATGAGTATAAAAAGGAACACCATGCAT GAGCTATTCAATATAGTAATTATAGGCAGATATTCAAAAGGCAAAAAGAGAAAGAGAAATTAACAAATCAAAGGCACAAT TAGATGGATACAGCAAAGACACAGGAAGTAACTGATCGTGTCTATGAAGACTTTGAACCATATCATGAGTCAGATAGAGA TGAAGGGCGTTTCACTGTTATGCTACCAGGTAAATGGAATTATATCAACAAATTATATTATATTTTGTATTCAATAATAG GAAAAAATCTTTAAGAGTAATTCTGATTATTATTCATCTGGGTGAACATGCAGGATATAGGAGGGATCAACTGAAGGTTC AGGTGACCTCAAAACCTGCCCTAAAGCTGATGGGTGAACGCCTCATCGTTGGGAACAGATGGCGTCGTTTCAGTTTAGAG TTCCCCATTCCTTCTGAATATGACACAGATGATGTGACTGCCACTTTTGAGGGAGGGAGGCTATCTATCAAATTTGGCAA ACTGATCAAGCCTAAGGAAACAACAACAGCTCCACCAGAAGAAGCGCCAATGCCTCAGGAACCATCACAAAAGGTTGCTG AGCAAAAGACTGCACAAGAGTCCCCAAAGGCAAAACAAGACACAGAAGCAGCAAGGACTAATGAAGTCTCTGAACAAAAG ACACCACAGAAGACTGCGCAAGAGGATGTGCCAGAAGCAAAACAAGACAAAGAAGAACCAAGGACTGATGAAGTTTCTGA ACAAAAGACGCTACAGAAGGAGGTGAAGGAGTCAACTGCTGAAATGGAAAAGAGCAAAACAGAAAAAGCTGCTAGCACGG AAAGAGTGACTGAGGAAGTCAAGACTAATCGCTTAACTGAGAAAACAGAAGCAGCAATCTCTAAAGCTCCTAAAACCAAA TCTGCCAAGTCTGTTACAAGATCCATAACTAGGCTTGTAGATTTCACTCTCTGTTTTGAACCAGCTAATCAGGCTGACAA TGAAGGCCTTGGAGATATGGCTGCAGGGTTTAACAAGTCGAAGAAATTGGTCAAATGGGGCATACTAATCTTATTGGTTG TGGGACTTGGACTTTATTATATAAATGCTTTCAGATCATCTCATGGAGAATGGAACTTCCAAGAGCTGTAATTTCCTTTC TGAAGTACTGATGATGACATTCATGAACACAACAATGTACTCAATGCATAAAAATTCAATAAAAGAATGAAATTATAAAA AAACTAACTTCAGACAATTATATTTCAGCTCAATTGTTGTGTAGATCACATAGATCTATTTATAATATATAATTTCTGAA ACACATCTCTCGTGATGACACCTCAAGTGACTTTTTCATTTTCTAACAGGTCAACTCAGCATTTCACATGACTTATCTTT CTATAAATTAATCTCTTAATTCCTCTTGATTTATTTTGTGACTTTTGAATTAATGAGATCAAGGTAATTGAGGAGTTACA AACTTCAATAAGTGCATTGTAACTAATTAGTTGAATGGACACTAACAACTATATCCACTCTTAACTCCCCAATCAAAATT CTCAGCTTGGGTGCAAGGACCTTAAAGATATTCAGGACGTTCTCAATTATAAGAATAAGTTGATTGTCACGAGCAGACTG ATACTACTATTTTCTAATTCTAACTAAGTCATTCTCACATGACACGGGTTTAAGTCTAGTTCTAATTAAACATTCTTCCA TAGTTTTACTTCATCTAATGACTCTCTCCCTCTATAAATATGCAGTGGTACAAGAGAAGCAAATGAGCATAAATTTTACT ATCCAAAGAGAAAATATAACAAATTCAATTTAGATCACATGATTTATGAGTATGACAATACAAAAGTTCTCAAGCTTACC TAAATGTGTCATATCATTGGATGACATAGTATTTTTTAACACTATTAGTACATCAAAATTAACCTCAGTATAATTTCTGA TGAGAAAACATGTACAATTTCTGGTGCATTCATTTCTTCTAGTTTTTTTTTTTCTTTTTATGATTAGATTGATGGATGGA GATGAATAAAATGGAGCGAAACAAAACAAGTTCATTCTATTTTATTCTATCCAAAACCTCCCCATAAATAATTCAAAACT GAAATAATTTTATTTCATTCCATTTCATTTCATCCCATCCCATATTCTCTATAAAGATACATGGAGGCAAAAGGGCAAAT GGGAAAATATAATTAACTTTACTTGCAACAGGAACAAGAAACCTCAGAACCACCACCACTGGCTGACATATAACTCTGTT CCCAAGCATCTGTAGGAACTGTTTCAGCATGAGGAACGTGACGAGGATGTTTTTCTCTCTTGTCTCCCCTGAGCTGCTTT AGACCATGCTTAAGGGCTGGTAATAAAGCCTCCATACACTCCGCAACAGCATTCGGGTTTCCCGGCATGTTAATGATCTG AATATCAAGAAATTTAGGACAATAACTTAGCCAGTAAACACAAATCTAGAAGACAAATAATATGTAAGATTCAGGGTGTA CTATTTACAGCAATAATCAATTAATGCGAGACTTCCTAACTAGATATGATACAGCAGTGCAGTGTTTCAACTAAGACATT TGAGGTTCACTTAATCCAAATTTACCCCGAAATATTGTGTTCTATAAGGTGGGAAGCAGAGGAAGACAGGATGACTGATA TTTACTTTCTTATATGAAGTTACCATGAAATACCAAATTTCTGTAAAGAAAATCTGCAAGATGCATAAAAAGATGAAAAA TGCTAACAACACTACTTTAACACTCTCTTTCAAACAATCTCCAAT
CDS sequence (LotjaGi1g1v0059400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACAGCAAAGACACAGGAAGTAACTGATCGTGTCTATGAAGACTTTGAACCATATCATGAGTCAGATAGAGATGA AGGGCGTTTCACTGTTATGCTACCAGGATATAGGAGGGATCAACTGAAGGTTCAGGTGACCTCAAAACCTGCCCTAAAGC TGATGGGTGAACGCCTCATCGTTGGGAACAGATGGCGTCGTTTCAGTTTAGAGTTCCCCATTCCTTCTGAATATGACACA GATGATGTGACTGCCACTTTTGAGGGAGGGAGGCTATCTATCAAATTTGGCAAACTGATCAAGCCTAAGGAAACAACAAC AGCTCCACCAGAAGAAGCGCCAATGCCTCAGGAACCATCACAAAAGGTTGCTGAGCAAAAGACTGCACAAGAGTCCCCAA AGGCAAAACAAGACACAGAAGCAGCAAGGACTAATGAAGTCTCTGAACAAAAGACACCACAGAAGACTGCGCAAGAGGAT GTGCCAGAAGCAAAACAAGACAAAGAAGAACCAAGGACTGATGAAGTTTCTGAACAAAAGACGCTACAGAAGGAGGTGAA GGAGTCAACTGCTGAAATGGAAAAGAGCAAAACAGAAAAAGCTGCTAGCACGGAAAGAGTGACTGAGGAAGTCAAGACTA ATCGCTTAACTGAGAAAACAGAAGCAGCAATCTCTAAAGCTCCTAAAACCAAATCTGCCAAGTCTGTTACAAGATCCATA ACTAGGCTTGTAGATTTCACTCTCTGTTTTGAACCAGCTAATCAGGCTGACAATGAAGGCCTTGGAGATATGGCTGCAGG GTTTAACAAGTCGAAGAAATTGGTCAAATGGGGCATACTAATCTTATTGGTTGTGGGACTTGGACTTTATTATATAAATG CTTTCAGATCATCTCATGGAGAATGGAACTTCCAAGAGCTGTAA
Protein sequence (LotjaGi1g1v0059400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTAKTQEVTDRVYEDFEPYHESDRDEGRFTVMLPGYRRDQLKVQVTSKPALKLMGERLIVGNRWRRFSLEFPIPSEYDT DDVTATFEGGRLSIKFGKLIKPKETTTAPPEEAPMPQEPSQKVAEQKTAQESPKAKQDTEAARTNEVSEQKTPQKTAQED VPEAKQDKEEPRTDEVSEQKTLQKEVKESTAEMEKSKTEKAASTERVTEEVKTNRLTEKTEAAISKAPKTKSAKSVTRSI TRLVDFTLCFEPANQADNEGLGDMAAGFNKSKKLVKWGILILLVVGLGLYYINAFRSSHGEWNFQEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 168 | 168 | 1.0E-82 | – | |
| Phobius | 1 | 273 | 273 | - | – | |
| PANTHER | 1 | 168 | 168 | 1.0E-82 | – | |
| Gene3D | 6 | 108 | 103 | 1.5E-9 | ||
| ProSiteProfiles | 8 | 113 | 106 | 13.764 | ||
| SUPERFAMILY | 23 | 100 | 78 | 2.16E-10 | ||
| CDD | 26 | 98 | 73 | 4.22866E-9 | – | |
| Pfam | 26 | 104 | 79 | 1.0E-4 | ||
| MobiDBLite | 98 | 213 | 116 | - | – | |
| MobiDBLite | 129 | 145 | 17 | - | – | |
| PANTHER | 139 | 293 | 155 | 1.0E-82 | – | |
| PANTHER | 139 | 293 | 155 | 1.0E-82 | – | |
| MobiDBLite | 156 | 213 | 58 | - | – | |
| Coils | 179 | 199 | 21 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 274 | 292 | 19 | - | – | |
| Phobius | 293 | 307 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0059400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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