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LotjaGi1g1v0525600.1

Overview

Field Value
Gene ID LotjaGi1g1v0525600
Transcript ID LotjaGi1g1v0525600.1
Lotus japonicus genome version Gifu v1.2
Description DNA-directed RNA polymerase; TAIR: AT2G29540.1 RNApolymerase 14 kDa subunit; Swiss-Prot: sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2; TrEMBL-Plants: tr|I3S968|I3S968_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:105255692..105258913) extracted from Lotus japonicus Gifu genome v1.2.

CATTAATATATGAAGTGAAAACCCTAACTCAGTATACCCTGGCTTTCGTGTCTCTGCCTCTCACTCACAGCTTCTCTTCC GTCGCCACCCTCCCTCCCTCCCAACCGCACCACCTCCCTCACCGCCTCACCTTTCGCCGGCGACCACGAAGGAGCTCTCC ACCACCAACAAGAAGGGTGAAATCCTTGTAAAGAGGAGCTCTCCAGTTCACCACAAACCAGGTTAATGCTATTTGTATAT TGCTATTTTCATTGCTATTGCGCAGTTCTGTGTTACTGAATAATTTTGCATTTTAATTTTTGGGTGCGTGCTACTCTGGT TGTTTGTGAATGGGGTCATGAACTCTTTCCTTTCTGAATTTTTGATGTGCTTTGCTGCATTAGCTAATTAAGTTACTGGT AAATGAATTGATCATGAATTAGTTGCTTGCTGTTCCTGGGTAGATTGATTGGTTATTGGTGTTCATTTAAGAGGAGAATT CAACTTACTTTTGTTTATGTCATGGGTAGAAGAGTATTATGTTTGTGGGAGTGGATTTTGTATTTATATTATAAGCTAAC TTGAGCACTCAATTAGAGTTTGTGTGATTTTCATTTGAGTTTGATAATGGATTGCATGTTTGAGGATAAGAGGAATCGAT ATGCATGTTATTATTAAAAGGGGACAGTTTTATGTTTTTGTTGGTAGCCATCTGTGATGGGCTTGTTGGCATGGCCTTGT GGTTCTTACTTCTTACTCATGTTTAGCTCTCTGGCACACCCTAGAGTGACTCTATATAGATAGATGGGAATGAATGGTTG GATCTCACTAATTTATCCACGATAATCTTTGACTATCGGTGCTATCTGTCACGTCAATTAATCTAATTTGCTAGCTGAGT GGAAGCATTTTTGTAGATCAAGTCATGATAGCTTAAAATAAATAACAAAGACGAGTAATGAGTTTTAGACCTATGCTTCA ATTGTATAATCAGGAGTATTTTTCTTATTATTCCATCTTGATTGCATATATATTTCTATGAGTTGTTTCTGGAAGTTTTT TTGATTTAGCTGTTCTTAAAGTGACTTATTTTTGTGCAGATTGATTATTTGTGATGGAACACGGGTCGCACTCTGATGAG AGTAAATCAACATTTTCTCTGACAGATGAGGATCATACTTTTGCAAACGCTATCAGATACTCCTTGAATCAAGAGTTAGT GATTTGCCATTTCTTGTGTGACGACCACTTTGTCCAGCATCTAGAGAATCCTTCTTAGCTTCATTGAGCTTCCTTTGTTT TTTATAATTTGGCGTTTGATTTAGTCATGTAGTCTACCGAAGTGTTATGATGTTTCAAGTCGTGTGGTCTTCTATTTGTC ATGATATGATAGAAAATGGAAATTTATTAAGGAGAGAAGTTTTATATTATAGCTAAAGGTGGATAGGATATACCTCAAAC AGAAAATTCTAGATATAACAAGGAACATGAGAAACTCTTCATTATAGTCTCAGTGCTTGAACCACTTGAGGGACATGTTT AGGGCTCTGAAGATGACCCTGCATCTGCCATGATTTTCAGTTTAGCCATTCACCAAAGTGTAAATGTATAATGAATATCT ATAAAAGGAACATGAGCTAGTTTTTTTGTGTGGAACAAATAAATTGATTGAAGATCCCCTCCCCCTTATCCTTCAGGGAG ATGAGAGCACTTGGGATATAATAAGAAGTCCCTAGTGATGTTGATTTTGTTTCTTTTGGTGGTGCTTTATCAATTACTTT ATCGGCCTGTATGTTCTTGACTTCTTGTTAAGTATAGTTTGAATGATTTTCTTTGTTATACATAATATTAGAAACATATG TTATATCTTCCTTTTGAATAGCTCTATTTCTGTATATACTAAAATGAGAGGAACTTGTTAACGTTGTCTTGCAGTCCAAG AGTGACATTTTGTGGGTACAGCATTCCTCATCCTTCAGATAATCGTGTCAATATTAGAGTCCAAACAACAGGTAACATGC AATTTCACGGTGGATATAATGTGATTCCAATTCACTTATTTGCGCCATAATCTAGTGCCATAAACCTTTTTGTATTACAG TCATAAGAGTGTGTGCTTTCTTCACCAATTTTAAGTTTTTTTAGACAATCTTTATGTTCTATTGACCTTTTATTTTTTGC TTTTTGTAGATAATTTATATGGAGTTGAAAATTGGTAGCAGACTTTTTTAAGCTAGCTAATTCTATAACTAGCTTGTGAT ACTAAGAAAGTTCTCATGTCTTAGAATTCTTTGTTGAATTTGAGAAGCTTCGTTATGGAAGTTCTTGTATAAATGCACTG TAAAAGGTTTAGATAGTGCATCTCTAATGAATAATGGTTAAATTGTGAAACGTCTACAATTTTTTTTCTTCTTTTAAGTA GAAAACATTATAGGACAATGCTAGTGAGAATACACAATGAGGTAACGGTCGTAATTTAAAGCTTCTTGTTTGTGTTTCAT TGTGGATAACAAGACTATTGATGCTTGCACTTATATTTTCAAATGATTCTTGTTATATCTAAACTTTGTCTCTTATGTTT GCAGGGGAACCAGCCCGTGAGGTGCTAAAAGATTCATGTCAGCATATGATGCTTATGTGCCAGCATGTCAAGGGCACTTT TGATAAGGCGGTCAACGACTTTAAAAGTAAAAAGGGTGGGAAGGATATGGATATCGATTAGCGTATTAGTTGTAGTTTTA TGTTAATTGAAGTTGATTTTGATGCGTATTGCTGGGAAAAAAATTCAGCACTACTAGAACACATACTTCACATCTTAGAG CATGAAACATGGCATCTCAATATTCTGATACATCATATTAAATGGCTTATTAAATTAAAAGTGAATGTTATTTGAAATTT TTTCGAAGTGGTAGAAATAACCTATAGACGGATTGTAACTTGTAATTTAACAACAATGATTAGAAGCTTCTGCAATGTAT TAGTTTTTTCATCCTTTTCCCACACCTTGACATCAATGTCTACCATTTTTATTAAACTAGAGACTAATTTGATCTACGTT ATGAATGTAATAAGATGAAATTGATGCTTTACTAATATTGTTAGTGTGCAACAGTGAAATTATAAAATTCGGTGTGTGCA CCCTCAGCCATAGAGGCCTGCTTGCACCCTCCATCACCTCCATTGCCTACACCCTCCACTAAAAATCATCCGAAAGAGGT CCAAAAGTAGAGAATATTATGC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0525600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACACGGGTCGCACTCTGATGAGAGTAAATCAACATTTTCTCTGACAGATGAGGATCATACTTTTGCAAACGCTAT CAGATACTCCTTGAATCAAGATCCAAGAGTGACATTTTGTGGGTACAGCATTCCTCATCCTTCAGATAATCGTGTCAATA TTAGAGTCCAAACAACAGGGGAACCAGCCCGTGAGGTGCTAAAAGATTCATGTCAGCATATGATGCTTATGTGCCAGCAT GTCAAGGGCACTTTTGATAAGGCGGTCAACGACTTTAAAAGTAAAAAGGGTGGGAAGGATATGGATATCGATTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0525600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEHGSHSDESKSTFSLTDEDHTFANAIRYSLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGEPAREVLKDSCQHMMLMCQH VKGTFDKAVNDFKSKKGGKDMDID
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13946
1 97 97 5.1E-52 –
PANTHER
PTHR13946:SF33
1 97 97 5.1E-52 –
Gene3D
G3DSA:3.30.1360.10
1 92 92 5.2E-32
IPR036603
CDD
cd07029
2 85 84 7.10333E-39
IPR033898
SUPERFAMILY
SSF55257
7 93 87 4.19E-29
IPR036603
Pfam
PF13656
12 82 71 1.3E-27
IPR009025
ProSitePatterns
PS01154
16 47 32 -
IPR008193

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003899
Molecular function DNA-directed 5'-3' RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0525600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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