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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0550300 |
| Transcript ID | LotjaGi3g1v0550300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase; TAIR: AT3G52090.1 DNA-directed RNA polymerase, RBP11-like protein; Swiss-Prot: sp|Q38859|NRPBB_ARATH DNA-directed RNA polymerases II, IV and V subunit 11; TrEMBL-Plants: tr|I3T213|I3T213_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0550300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:96722653..96724612) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTCAGTAAGTTGTCTTATAAATATATATTTGATCGTAGTGAGAGTGGAAGAGAGAAAGAAGCAGTTGCAGAGCAGAG CAGAAGAGTAGAGTGAAGCCATGAACGCACCTGATCGTTACGAGCGTTTCGTCGTCCCTGAAGGCACCAAAAAGTATCTT CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTCCATTCTCACTTTCCTTTTTCTTCTCTCACTCGCTCTTTC TATTTTGTCTGAAACTTTCAAATTTTGATTTCCGAAAGGGTTTCTTACGAGAGGGACACCAAGATCATCAATGCGGCATC GTTCACCATAGAGCGAGAGGATCACACCATCGGAAACATCCTCCGAATGTAACCCTCACTCCTTTCTCTCTTAATCTGGG AAAATTCTCAGTTTCTAAACCCTAAACCCTAATTTGTGTTTTCTGTTTGTTTGTTTGCAATTTTGTGATGTTCAGGCAGC TTCACAGAGACCCCAATGTGTTGTTCGCTGGATACAAGCTTCCTCATCCTCTTCAGTACAAAATTATCGTCAGGGTTAGC TACCCCACAATCTTTTCCTCACTGATATGCCTTTTATTGATGATTTTTACTTAGTATGGCACAAATGCATGTCTTTTATT TACTTCCATGAAATGGGTATGCATAAAGTTGCCATTTTTTTTCTTGATTTCCTGTTTTTGTGATTATTTTTGCAGATACA CACAGCTAGTCAGTCTTCACCTATGCAGGCATATAACCAATCTATTAATGATCTGGACAAGGAACTTGATCATTTGAAGA ATGCTTTCGAGGTATAATCATGTTTCTCTTTACATCATTGATACTTGTTTTCTGTCCTATCTTGTATCAGCCATTAGTAA ATTTACTATCACTCCATGCTTGTTTCCCTTGTTCCATTTCATTATCTCTGCTTCCCTAACCTTGAAAGTAGTTGTGGATT TCTGAAATTAGAATATTTATACCATTTGGTTATTTGTGTTTCTAGTGTTTACTGGTACCCTTGGATGAAATTGGAGATTG ACTGAGGGTTCAGCATATATAACTCAAATTTATGCATTAGTACCCGGCTTTTCCTTTTGAGTTTTGATGTTGTCTTCTCT TCTATGGCACTCAGTTTTTTTTTTCATAAAAACATTTAGAACATTGTTATGTATGGGAGAATAAGAACACCATCTACTTG GGCGCTTGGGATTTGGTTTTCCTTCTCAAAGAGATTCTTCCTTATTTGATACGTAACCCCTTATCACATAACCTCTAATG ATTCTGTAGCTCTTGTATAGATGGTTTAAAACACTAATACCATATAATTAGCTCCTTCAAGTGGTGGACATCATTATATC ATTCCAGAAAGTGTGGAAATTTGGGTAGGATTTTCTTGAACCCATGTAATTCTTATAGATGATTGTAGTATATTCTACTT CATATGCTGGGAATGGGTAAATCTTATTTGGATTCTATTGGGCATTCTTATCTTATTTACTTTTTCCATTAGTAACATGC TCAAAATTTTAATTGCAGGCAGATATGTTGAGGTTTTCAAGGGACTATTGATTTACTCTCAAGATGGAAGTTGTGTGTGT TAGACACCTGAACAGATATGGAGATAGCAGATCACTACTGCTAAATTGAATTTAAATAGAATGTTTTGAATGTTTTAGGA GACTTGTTAAAGATGTTTGTGCTGGAACTAAGAAATTCAGTTGTGAACAATTTCAATGTGAAATGAAGATTTGCAAAGTA ATTTCCTGTCTCATGCATCTTATATACTGTGGATTTCACGTTTACTGTCCATAATATATTCTTCTGAGAGCGTCTAGTGT TGAGTAACCGGTTATATTGCTTGGATTATTTTAGTGCATGTATTGTTTGAATACACAATGGAAAACTATAGGAAAGCAAA AATCACGGCGGGCAAAAACAACTTCTCTTCGCTTTTGCGA
CDS sequence (LotjaGi3g1v0550300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACGCACCTGATCGTTACGAGCGTTTCGTCGTCCCTGAAGGCACCAAAAAGGTTTCTTACGAGAGGGACACCAAGAT CATCAATGCGGCATCGTTCACCATAGAGCGAGAGGATCACACCATCGGAAACATCCTCCGAATGCAGCTTCACAGAGACC CCAATGTGTTGTTCGCTGGATACAAGCTTCCTCATCCTCTTCAGTACAAAATTATCGTCAGGATACACACAGCTAGTCAG TCTTCACCTATGCAGGCATATAACCAATCTATTAATGATCTGGACAAGGAACTTGATCATTTGAAGAATGCTTTCGAGGC AGATATGTTGAGGTTTTCAAGGGACTATTGA
Protein sequence (LotjaGi3g1v0550300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTASQ SSPMQAYNQSINDLDKELDHLKNAFEADMLRFSRDY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 108 | 108 | 8.0E-69 | – | |
| PANTHER | 1 | 108 | 108 | 8.0E-69 | – | |
| Gene3D | 1 | 113 | 113 | 7.1E-47 | ||
| SUPERFAMILY | 1 | 109 | 109 | 2.83E-35 | ||
| CDD | 13 | 105 | 93 | 5.84693E-52 | ||
| Pfam | 31 | 103 | 73 | 1.5E-25 | ||
| ProSitePatterns | 35 | 66 | 32 | - | ||
| Coils | 84 | 104 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Cellular component | RNA polymerase II, core complex | RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0550300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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