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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009646
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.768s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0346569.1
n.a. Late embryogenesis abundant (LEA) protein-related [Theobroma cacao] gi|508720930|gb|EOY12827.1| chr0 181807057 181808777 -
2 domain predictions
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Lj3g3v0669220.2
n.a. Late embryogenesis abundant (LEA) protein-related [Theobroma cacao] gi|508720930|gb|EOY12827.1| chr3 7311396 7312940 -
2 domain predictions
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Lj3g3v3086010.1
n.a. Late embryogenesis abundant (LEA) protein-related [Theobroma cacao] gi|508785783|gb|EOY33039.1| chr3 38759092 38769060 +
2 domain predictions
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Lj3g3v3086010.2
n.a. Late embryogenesis abundant (LEA) protein-related [Theobroma cacao] gi|508785783|gb|EOY33039.1| chr3 38759092 38761433 +
2 domain predictions
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Lj3g3v3086010.3
n.a. Late embryogenesis abundant (LEA) protein-related [Theobroma cacao] gi|508785783|gb|EOY33039.1| chr3 38767168 38769060 +
2 domain predictions
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Lj6g3v1629660.1
n.a. late embryogenesis abundant protein-like protein [Arabidopsis thaliana] gi|30685319|ref|NP_188574.2| chr6 18378369 18379805 +
2 domain predictions
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Lj6g3v1629670.1
n.a. late embryogenesis abundant protein-like protein [Arabidopsis thaliana] gi|30685319|ref|NP_188574.2| chr6 18378890 18380032 +
2 domain predictions
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Lj6g3v1629690.1
n.a. late embryogenesis abundant protein-like protein [Arabidopsis thaliana] gi|30685319|ref|NP_188574.2| chr6 18387199 18392130 -
2 domain predictions
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LotjaGi2g1v0360900.1
n.a. Late embryogenesis abundant (LEA) protein-related; TAIR: AT5G60520.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2; TrEMBL-Plants: tr|I3S0K3|I3S0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0360900 LjG1.1_chr2 85839682 85850483 +
2 domain predictions
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LotjaGi2g1v0360900.2
n.a. Late embryogenesis abundant (LEA) protein-related; TAIR: AT5G60520.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2; TrEMBL-Plants: tr|I3S0K3|I3S0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0360900 LjG1.1_chr2 85840309 85850394 +
2 domain predictions
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LotjaGi2g1v0360900.3
n.a. Late embryogenesis abundant (LEA) protein-related; TAIR: AT5G60520.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2; TrEMBL-Plants: tr|I3S0K3|I3S0K3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0360900 LjG1.1_chr2 85840309 85850428 +
2 domain predictions
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LotjaGi3g1v0077900.1
n.a. Late embryogenesis abundant protein-related; TAIR: AT5G54370.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|P19899|CAPSD_MNSV Capsid protein; TrEMBL-Plants: tr|I3SIK9|I3SIK9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0077900 LjG1.1_chr3 8597969 8604299 -
2 domain predictions
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LotjaGi3g1v0078100.1
n.a. Late embryogenesis abundant protein-related; TAIR: AT5G54370.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q03647|MEL_SACCA Alpha-galactosidase; TrEMBL-Plants: tr|I3SIK9|I3SIK9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0078100 LjG1.1_chr3 8605061 8606691 -
2 domain predictions
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LotjaGi3g1v0321700.1
n.a. Late embryogenesis abundant protein-related; TAIR: AT5G54370.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q6G465|RPOZ_BARHE DNA-directed RNA polymerase subunit omega; TrEMBL-Plants: tr|I3SAD4|I3SAD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0321700 LjG1.1_chr3 68520275 68526376 -
2 domain predictions
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LotjaGi6g1v0268500.1
n.a. Late embryogenesis abundant protein; TAIR: AT3G19430.2 late embryogenesis abundant protein-related / LEA protein-like protein; Swiss-Prot: sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein; TrEMBL-Plants: tr|A0A072V5G0|A0A072V5G0_MEDTR Late embryogenesis abundant (LEA)-like protein; Found in the gene: LotjaGi6g1v0268500 LjG1.1_chr6 58337611 58339296 +
2 domain predictions
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LotjaGi6g1v0268800.1
n.a. Late embryogenesis abundant protein; TAIR: AT3G19430.2 late embryogenesis abundant protein-related / LEA protein-like protein; Swiss-Prot: sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein; TrEMBL-Plants: tr|A0A072V5G0|A0A072V5G0_MEDTR Late embryogenesis abundant (LEA)-like protein; Found in the gene: LotjaGi6g1v0268800 LjG1.1_chr6 58345952 58347773 -
2 domain predictions
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