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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0268500 |
Transcript ID | LotjaGi6g1v0268500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Late embryogenesis abundant protein; TAIR: AT3G19430.2 late embryogenesis abundant protein-related / LEA protein-like protein; Swiss-Prot: sp|Q8N8U9|BMPER_HUMAN BMP-binding endothelial regulator protein; TrEMBL-Plants: tr|A0A072V5G0|A0A072V5G0_MEDTR Late embryogenesis abundant (LEA)-like protein; Found in the gene: LotjaGi6g1v0268500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58337611..58339296) extracted from Lotus japonicus Gifu genome v1.2.
CAAACCAAGAACTCATATATAGCTATATATTTGAATTCTGAGAACAGAGAAACAATAGCTTCAATGGCAATGACAATCCT TCAAGTGTTGTTGCCAATCCTTCTGGCGATGGTGGCAGGCATAGCAGCTGCTCCTCCTGCTGGAGAACCCTATAATTACA AATATGGGTATGCAACCTGCAACATAAAGAAGTACAAGTATTGCTATAATTTGCCACAAGAGTGCCCTGCATCTTGCCCT GGTAGATGTAAAGTGAATTGTGCCACCTGCAAACCTGTTTGTATTCCGAAAGAGAAAGCAAAATGCAAGAACAAAAAATT CCCAAGATGTTACAACACGGAACATGTTTGCCCTGCTGCATGCCCTGGTCCCTGTGAGGTTGATTGCAACACTTGCAAAC CAGTTTGCCGTAAGCCTTTAAATTGCTAATATATATACATTTCCCTCTCCTTATTAATATCTGCATTAAACTCTAACACT AAACACTCAGCACCAATATTTTTAGGCTTTGTCTAGCGTGAATTAAAAAACAAATCTGGTTCATAAGTTAAAAAGGTTCT ATGTAAATTAATTTTAAGACATAAGTAGCATATAGTAAATAAGTGATTTTATATTGAATGCATGTTTATATCAATCACAG ATTGTGACAGACCAGGAGCTGTTTGCCAAGACCCTCGTTTCATCGGTGGTGATGGAATCACATTTTACTTCCACGGCAAG AAAGACAGCAACTTCTGCCTGGTATCCGACCCAAACCTCCACATAAACGCACACTTCATCGGCAGAAGAAACCACAACAT GAAGAGGGACTTCACCTGGGTCCAATCCATCGCTATCCTCTTCGACCACCACCAACTCTTTGTCGGTGCTGAGAAAACCG CCACATGGGAAGACTCCAACGACCGCCTCGCCCTCTCCTTCGACGGTGAGCCCATCACCCTCCACAAATCAGAAGGCGCC ATGTGGAAATCCTCCGGCGTGTCCATTCACAGAGATGCTGACACAAACAGCATTGTTGTTGAGGTTGAAGGAAAGTTCAG GATGACATCGAAGGTTATCCCTATAACTGAAGAGGAGTCGAGGATTCACAGATATGGGATTACTGAAGAGGACTGTTTTG CTCACCTTGATGTTGGGTTCAGGTTCTTCTCTTTGAGCAGTGAAGTGAGTGGTGTGTTGGGACAAACATACAAGCCTGAT TATGTGAGCCGTGTGAATGTTGGAGCGAAAATGCCTGTGATGGGTGGTGCAGGGAAAGAGTTTCAAACTACCAGCTTGTT CACCCCTGACTGTTCTGTTGCTCGCTTTGTTGGATCCAACAATGATGAGGTTGTGACTTTGGAGATGCCTGCGATGAACT GCGTGAGTGGAATTGATGGACAAGGAGTTGTCTGCAGGAGATAATTTCATTGTTTATCAGGAAGGTGACAGAAGTGTGTC AAGTGATCAATTTTTATTTTTATGTCTAATGATGATTATGATGAAATCATCAAATAATTCTTGGTGGTGTATGTCACTGC CTCAAATTATGTCTTTGTGATGCTGTATCACAAAACATAACATATATATTATATTTGCATGAATAAAAAAAAAACATTTA TATGTACCCTATAAGAATGCAATGCAATATCAGATGTAAACAGTACCTTAATCAACAAACGTAGCAAAATTGAAAAAGAA ATTTCA
CDS sequence (LotjaGi6g1v0268500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGACAATCCTTCAAGTGTTGTTGCCAATCCTTCTGGCGATGGTGGCAGGCATAGCAGCTGCTCCTCCTGCTGG AGAACCCTATAATTACAAATATGGGTATGCAACCTGCAACATAAAGAAGTACAAGTATTGCTATAATTTGCCACAAGAGT GCCCTGCATCTTGCCCTGGTAGATGTAAAGTGAATTGTGCCACCTGCAAACCTGTTTGTATTCCGAAAGAGAAAGCAAAA TGCAAGAACAAAAAATTCCCAAGATGTTACAACACGGAACATGTTTGCCCTGCTGCATGCCCTGGTCCCTGTGAGGTTGA TTGCAACACTTGCAAACCAGTTTGCCATTGTGACAGACCAGGAGCTGTTTGCCAAGACCCTCGTTTCATCGGTGGTGATG GAATCACATTTTACTTCCACGGCAAGAAAGACAGCAACTTCTGCCTGGTATCCGACCCAAACCTCCACATAAACGCACAC TTCATCGGCAGAAGAAACCACAACATGAAGAGGGACTTCACCTGGGTCCAATCCATCGCTATCCTCTTCGACCACCACCA ACTCTTTGTCGGTGCTGAGAAAACCGCCACATGGGAAGACTCCAACGACCGCCTCGCCCTCTCCTTCGACGGTGAGCCCA TCACCCTCCACAAATCAGAAGGCGCCATGTGGAAATCCTCCGGCGTGTCCATTCACAGAGATGCTGACACAAACAGCATT GTTGTTGAGGTTGAAGGAAAGTTCAGGATGACATCGAAGGTTATCCCTATAACTGAAGAGGAGTCGAGGATTCACAGATA TGGGATTACTGAAGAGGACTGTTTTGCTCACCTTGATGTTGGGTTCAGGTTCTTCTCTTTGAGCAGTGAAGTGAGTGGTG TGTTGGGACAAACATACAAGCCTGATTATGTGAGCCGTGTGAATGTTGGAGCGAAAATGCCTGTGATGGGTGGTGCAGGG AAAGAGTTTCAAACTACCAGCTTGTTCACCCCTGACTGTTCTGTTGCTCGCTTTGTTGGATCCAACAATGATGAGGTTGT GACTTTGGAGATGCCTGCGATGAACTGCGTGAGTGGAATTGATGGACAAGGAGTTGTCTGCAGGAGATAA
Protein sequence (LotjaGi6g1v0268500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMTILQVLLPILLAMVAGIAAAPPAGEPYNYKYGYATCNIKKYKYCYNLPQECPASCPGRCKVNCATCKPVCIPKEKAK CKNKKFPRCYNTEHVCPAACPGPCEVDCNTCKPVCHCDRPGAVCQDPRFIGGDGITFYFHGKKDSNFCLVSDPNLHINAH FIGRRNHNMKRDFTWVQSIAILFDHHQLFVGAEKTATWEDSNDRLALSFDGEPITLHKSEGAMWKSSGVSIHRDADTNSI VVEVEGKFRMTSKVIPITEEESRIHRYGITEEDCFAHLDVGFRFFSLSSEVSGVLGQTYKPDYVSRVNVGAKMPVMGGAG KEFQTTSLFTPDCSVARFVGSNNDEVVTLEMPAMNCVSGIDGQGVVCRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
Phobius | 1 | 3 | 3 | - | – | |
SignalP_EUK | 1 | 22 | 22 | - | – | |
Phobius | 1 | 22 | 22 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
Phobius | 4 | 15 | 12 | - | – | |
TMHMM | 5 | 27 | 23 | - | – | |
Phobius | 16 | 22 | 7 | - | – | |
PANTHER | 19 | 73 | 55 | 1.1E-166 | – | |
PANTHER | 19 | 73 | 55 | 1.1E-166 | – | |
Phobius | 23 | 369 | 347 | - | – | |
PANTHER | 76 | 369 | 294 | 1.1E-166 | – | |
PANTHER | 76 | 369 | 294 | 1.1E-166 | – | |
Pfam | 281 | 338 | 58 | 4.9E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0268500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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