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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0078100 |
| Transcript ID | LotjaGi3g1v0078100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein-related; TAIR: AT5G54370.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q03647|MEL_SACCA Alpha-galactosidase; TrEMBL-Plants: tr|I3SIK9|I3SIK9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0078100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:8605061..8606691) extracted from Lotus japonicus Gifu genome v1.2.
CTGTCACGTTCGTGGAATTGAGCTACAGAACAAGTGCAGCAAATGTCAAAGCTTAAAAAATAAAAAATTACCCACTTGCA AAGTATTGTAATAAGAAGGTGAAGCCAAAGAGAGCATATAAGGAGAGGCCACATTGATCTCCATATCTATCAAATCAAAT CTAAGAGAAAAATCATGGGTGTCTCAAGAAGCATAGGCTTAAGTACATTTGTCCTGCTATTTGCATTCTTTATGATGCAT GTTGATGCTTTTTATTCAGATACTCAAACCTGCACCAACCGTAAGAGCCGATGTTTTCTCAAGAAAATACAATGCCCTCA TGAATGCCCTTTGAAATCACCTTCTAACCCAAAAGACAAAGTCTGTTATCTTGACTGTGATTCTCCCATGTGCAAAGCTT CTTGCAAAAGTAAGATCATTTTATGTTCAGCAACAAAACTTTACACATTACACAACTGCATGTTATTTAAATAGAAATTC TTGATGTAGCACATTCTTTTGTTCAATTGTTTACCTATAACACTGCTCACCACCTTTTTTTTTCATCTAATACGAGACTT CTTACTCACACTTTATATCCCAATATGATGATGGCATCACAGGTCGCAAACCAAATTGCAATGGCCGTGGATCCGCATGC TTGGACCCCCGTTTTGTTGGTGCAGATGGCATTGTTTTCTACTTCCATGGAAGGCGCGACGAGCATTTCAGCTTGGTGTC TGATGTCAACCTCCAAATCAATGCCCGCTTTATTGGCCTTAGGCCAGCAGGGAGACCAAGAGACTATACTTGGATTCAAG CACTGGGAATCCTCTTTGATTCCCACAAATTTTCTGTTGAGGCCACCCCATCAGGAATTTGGGATGATGAAATTGACCGT TTGAAGATCTCTTATGATGGATCAGAACTTGACATCCCAGAAGGTCACCTCTCCACATGGCAAGACCAAGAAAATCAACT TCGAATCGAGAGAACATCGAGCAAGAACAGTGTCTTGATTACCCTCCCGGAAGTCGCGGAGATATCTGTAAATGTGGTGC CTGTTACCAAAGAGGACAGCAGAATCCATAACTATCAGATTCCTGATGATGATTGTTTTGCTCACTTGGAAGTGCAGTTT AAATTCTATGGTCTATCCTCCAAAGTTGAAGGAGTTCTTGGCAGGACTTATCAGCCAGATTTTCAGAATCCGGCGAAGCC TGGTGTGGCAATGCCGGTAGTTGGAGGGGAAGACAAGTACAGAACCACTTCTCTCACTTCTGCAGACTGCAGTGTTTGTA TGTTCTCTCCTGCTGAAGCTTTTGAGAAGGAAGACTCAGTGATGGAATATGGTATGCTGGATTGCACTGGTGGTGCTAAC AGTGGGAATGGCATTGTTTGCAGAAGATAAATTTGACAGTTTCCTTTGTTTTCCTATAATGATTCAAAGTTTATTGTAGC CTGAGGACCATAATTGTGTGCTTACTCAGTATCCAAAAAAGCATTCTGTACCCTGATTTCTGATTTCCTATTAAATAAAA AGTGTAATCTTTTGTTTGTTCAACATATAATTTATGAAATATCAATTCATACTCTAATGATAACCTGCACAAGATCTAGA TTATAGTTAAAAGTCTGAAAACACTGTCTTT
CDS sequence (LotjaGi3g1v0078100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTCTCAAGAAGCATAGGCTTAAGTACATTTGTCCTGCTATTTGCATTCTTTATGATGCATGTTGATGCTTTTTA TTCAGATACTCAAACCTGCACCAACCGTAAGAGCCGATGTTTTCTCAAGAAAATACAATGCCCTCATGAATGCCCTTTGA AATCACCTTCTAACCCAAAAGACAAAGTCTGTTATCTTGACTGTGATTCTCCCATGTGCAAAGCTTCTTGCAAAAGTCGC AAACCAAATTGCAATGGCCGTGGATCCGCATGCTTGGACCCCCGTTTTGTTGGTGCAGATGGCATTGTTTTCTACTTCCA TGGAAGGCGCGACGAGCATTTCAGCTTGGTGTCTGATGTCAACCTCCAAATCAATGCCCGCTTTATTGGCCTTAGGCCAG CAGGGAGACCAAGAGACTATACTTGGATTCAAGCACTGGGAATCCTCTTTGATTCCCACAAATTTTCTGTTGAGGCCACC CCATCAGGAATTTGGGATGATGAAATTGACCGTTTGAAGATCTCTTATGATGGATCAGAACTTGACATCCCAGAAGGTCA CCTCTCCACATGGCAAGACCAAGAAAATCAACTTCGAATCGAGAGAACATCGAGCAAGAACAGTGTCTTGATTACCCTCC CGGAAGTCGCGGAGATATCTGTAAATGTGGTGCCTGTTACCAAAGAGGACAGCAGAATCCATAACTATCAGATTCCTGAT GATGATTGTTTTGCTCACTTGGAAGTGCAGTTTAAATTCTATGGTCTATCCTCCAAAGTTGAAGGAGTTCTTGGCAGGAC TTATCAGCCAGATTTTCAGAATCCGGCGAAGCCTGGTGTGGCAATGCCGGTAGTTGGAGGGGAAGACAAGTACAGAACCA CTTCTCTCACTTCTGCAGACTGCAGTGTTTGTATGTTCTCTCCTGCTGAAGCTTTTGAGAAGGAAGACTCAGTGATGGAA TATGGTATGCTGGATTGCACTGGTGGTGCTAACAGTGGGAATGGCATTGTTTGCAGAAGATAA
Protein sequence (LotjaGi3g1v0078100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVSRSIGLSTFVLLFAFFMMHVDAFYSDTQTCTNRKSRCFLKKIQCPHECPLKSPSNPKDKVCYLDCDSPMCKASCKSR KPNCNGRGSACLDPRFVGADGIVFYFHGRRDEHFSLVSDVNLQINARFIGLRPAGRPRDYTWIQALGILFDSHKFSVEAT PSGIWDDEIDRLKISYDGSELDIPEGHLSTWQDQENQLRIERTSSKNSVLITLPEVAEISVNVVPVTKEDSRIHNYQIPD DDCFAHLEVQFKFYGLSSKVEGVLGRTYQPDFQNPAKPGVAMPVVGGEDKYRTTSLTSADCSVCMFSPAEAFEKEDSVME YGMLDCTGGANSGNGIVCRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 10 | 340 | 331 | 1.9E-165 | – | |
| PANTHER | 10 | 340 | 331 | 1.9E-165 | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 340 | 315 | - | – | |
| Pfam | 250 | 306 | 57 | 6.6E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0078100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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