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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0321700 |
| Transcript ID | LotjaGi3g1v0321700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein-related; TAIR: AT5G54370.1 Late embryogenesis abundant (LEA) protein-like protein; Swiss-Prot: sp|Q6G465|RPOZ_BARHE DNA-directed RNA polymerase subunit omega; TrEMBL-Plants: tr|I3SAD4|I3SAD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0321700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68520275..68526376) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAATTAAATAAATAAAGACCCACCGGCCGAATTTTAATATAAATAGAGCCAGTCATGAACCATATAGAGCATGCAA ATTAGAAGAGGTGACATTGGTGAAAGTCATTAGTCATGGATATGTCAAGCAGCAATAGTTTAATACTGGTCCTGGTGTTG TTTGCATTCTGTTGTGAAATGCAAATGATTGCAGGAATAGACTATGTGACATGCACCTCTCTTGGTAGCCCATGCTTTGG GAAGAAAAGGGAATGCCCTTATGAGTGCCCTCTTAAATCACCATCTGACCCAAAAGCTAAAGTCTGCTATATTGACTGTT CTTCTCCCACCTGCCAAACTTATTGCAAACGTAAGATCTTTATTTTCTACCTTCATTTGCCAAGTCTAAACAAAATTTTA TTAGCCTGTTTTGTATGTGCATCTAACACACTTCAAAGCACTACACATTGTAGCTATTCAATAATGTGGTTTTCTAGCTA GTTGTGGTTTCTGGACTAGAAGTGAAACCAAACACACACTGTAACCCTATATTATTACAGGTTTGGATTCACTTTTTATT CTCATGATCGAGTCCAAAATCACTTTTTCCATGAAAATCATTCTACTCCAAGTCTCCAATATTAGTACATAATTGATTTT ACTTTTGATAAGGCATTTCTTGTAGCTTCTAAGAAATAGAATTGATTTTGACTTATTAGAAGCATAACTGAACATACACA TTATGTAACTTTCGGTCTAGACATGTAAAGGATTGCATGTCAAACTTGGATCAGACACTCACTTATAACATGTTTGGTTT TGCTGTTGAAAGCCTCACAATCACTTATCCAAACTTATTAATCAATTAAAATGCTTGAGTTGGCATATTCTTCATGTAAG TTCATCTTCATTTAATGTAACAAATTTTCATTTCTTTATCTGATAACAACAGGTTACAAACCAGACTGCAATGGTCGTGG ATCTGCATGCTTGGACCCTCGCTTTGTTGGAGCAGATGGCATTGTTTTCTACTTCCATGGAAGGCGCAACGAGCATTTCA CCTTAGTATCTGACGCCAACCTCCAAATCAACGCCCGTTTTATCGGTCTTAGGCCTGCCGGTAGAAGCAGGGACTATACT TGGATTCAAGCATTGGGACTCCTCTTTGATTCCCACAAGTTCACTGTTGAGGCCACCCCAGCTGCTAACTGGAATGATGG AATTGACCATTTGAAGTTCTCTTACAATGGAGAGGAACTTGTCATCCCAGAAGGTTACCTCTCTGCATGGCAATCTCCAG AAAATCAACTGAGAGTGGAAAGAACATCAAGCAAGAACAGTGTTTTGGTTAATCTGCCTGAAGTTGCAGAGATATCTATC AATGTGGTTCCTGTCACTAAGGAAGACAGTAAGATCCACAACTATCAGATTCCTGATGATGATTGTTTTGCTCACTTGGA GGTGCAGTTCAAATTCTATGGTCTATCCTCCAAAGTGGATGGGGTTCTTGGAAGGACTTATCAGCCTGATTTTCAGAATC CGGCGAAGCTAGGTGTGGCAATGCCAGTAGTCGGAGGGGAAGACAGGTACAGAACCTCATCACTTCTTTCTGCAGATTGT GGTGATTGTGTATTTGCTCCTGGTCAGGCTTCAGAGAAGAAGAACTCCATGATGGAATATGGTATGCTGGATTGCACTGG TGTGGCCAACGGTGGCAATGGAATAGTTTGCAGAAGATAAATATATGAGTTGTTGGAAGTTGTAAGTGTGATAAGATAAT ATTTTCTTTCTATTGGGAAAAAATAAATGTACTGTGCACCCTGATTTCTTGTTTGTATTCTTGTTGAATAAGAAGTGTAA TCTTGTGTTTGTTTATTTCATAAATAAATAAATATTGTTGTGTCAAGTAAGGCTCTCTCATTTCATATCTTCAATAATAT CAGGCCAAAGATCAAGTCTTTAGTTGGATCTAATTTGCCTTGGATCTTAAAAAATGATACCTCCAAGAAAGTGCCATATA AAGTAAAATAATAACAGACACAGGAGATATTTGGACATACATATATTCAAGCATAGACAACTATAAACTTATCATGTAAA AAAAAACCAAGAAATGGAATTTAAGGTGAAATATTATGAAACTAGAACAATTATATATTCTAGATTGTACAAAAAATAAT GGGAAATACTTAGTTTCAAGGAGAACTGGTGTATTGAAGAAATAGGAGAAAAATAAAGCATCTCTAACTATTCATGTCTC AAGATTTTCTCAGAAGTTTAACATCATTTTCAACTTATTGAAGTTCCATATTGATTATAACTATATACCAATTTCATAGA GTACTGAAACTTTTAAAATGAATCTCTTTAGCAGCTGAATGTAAATAGTAGAACAGCATCTCAAGAATTCCCAGAGAATT GAGAAAGAAAGTCATTCAACTCATAAGTGTATTCTCCTACTTGCCGCATTTATGTAATTAAGAACATGACCTCCATATAT TCTAAGCTATAAGAAGTAAGAACAACTTGGGAGCTGAACTCCAAATTGCTTTATGTTTAGTACAACAGAATCTTAGGGCA CCTTGCACCAGCTCATTGGTACCCATCACTATAACTCAAGTATTTTACATTAAATTGCTTATGGGCAAAAAAATGGATTA TAAAAGCAGTAACTAAATAAGAAATAACCTTCATTCACCAATCAGGACTTTTCAAGTCCTAACGCCAGAGCCACCCCACC ATGCTTCATGGCCCTTGGCCAGCATCATGGATCAACAAAGAGCTCATCTTCCGCGAGGATTAACTAATTGTGAGAACACT GCACTTGTGGCAACATCTTCTGGATCCTCATCCGTGCACGAGTTTCCCCCTTCAATCATACTCACACTGTTATCAAAATG CTCAAGGGGTGTCAACTGAATTCCTGTAATGTGGTTCGTGCTGTTATCTTCCGGTTCCATGAGTGCTGATGAGGTCTCTT GAAGCTGCAGAGCATATTCAAGGTTCCACAAGACATCTCCCATTGACGGCCTGTCCACACCGTACTCGGCCAAGCACTTC TCGGCCGTCTCCCCGAATTTCTTAAGCGAAGCGGGATTCACCTTTCCTACCAGATTTTTATCCATGATTTGTTCAAGCAT CCCTTTTTTCTGCCAGCTCATTGCCCACTCAGCAATATTAACCTGCTCCCTTGGAAGTACAGGGTTCAAAGCTGGTCTTG TGCATAACACTTCCATTAACACTACTCCAAATGAATACACATCAGATTTCTCAGTGAGCTGTTGCCTTCTGAAGTATTCA GGATCAAGATAACCGAAACTTCCTTTCACAGCAGTGCTCACATGGGTCTGATCAAGAGCAGGGCCAGCTTTGGAGAGGCC GAAATCAGCAACTTTCGCAACAAAATTCTCATCCAAGAGGATATTTGTTGTCTTTACGTCTCGGTGAATTATGCTCTGAG ATGCTCCGGTGTGGAGATAATGAAGGCCTCTTGCTGATCCAATGCAAATTTCTAGCCGCTGCTTCCACGATAGAGGTGGC AGGTCTGATCCATACAAATGGCTCCGGAGGGGTCCGTTAGCCATGTACTCATAAACAAGAATCATTTCTGACCTCTCATC ACAATAACCAATGAGAGACACGAGATGGCGGTGGCGAAGCTTGGATAACATTTCAATTTCAGTTCGGAATTCTGCAAGAC CTTGCTCAGATCTCGGGTTACCCCTTTTAACAGCCACATTAGTCCCATCTTCAAGTGTTCCCTTATAAACCCTTCCAAAT CCACCAACACCAAGTAGCAGCTTCTCATCAAATTTGTTTGACGCGTCTAGGATTTCCTGGAAACTGAAGAATCGTCCCAG ATTTGATGAAGCTAAAGAAATGCAGCTTGCAGTTCCACTCTTCTGTGATGTTGTTGACATCTTTGTCAAGGTCAGAGAGT TTCCATACAGGGGTAAAGGCAGCCATGAATGGCCGCCCTGTTGAGGAGATGACTTCGACTTGCGCCCCACCAAGCAGCAA CAACACAAGCCAACCAATGCTACAGCAGCTAGAGCCCCAACAACAGAACCAACTATTATCCCTACAATGTTCTTCTTTGA ACTAGAACTAGGAAGAAGAATGTCAACCGAAGAAAGCCCATCCAAGCTCTTTAATGCGTTGCTGATCTTCATTATCTCCA ATCCATTCATAGTGGCATTTGTGAGATCAGCCATTGAATCAGGACCAACACTTACAGTCAAAGTGCTAGAATCTGCTGAG ACATTGGAAACGAAGTCCTTGAAGTAAGCCACAGACAAGTCATTAGTTATGGATGAGAGATCAAAACTTACAAGAGCTGT GTCAGAATTTATGTACAAATTAAACACTAAAGTGTTGAGTGACTTGCTCATAATATCACAAAGGTGCACCCGGACAAAAT AAGAGAAATTTGGATCCACAGGGAAGACCCAAGTAATGTTGAAATTTTGGTCATTCACATTTGCATCCCCCATTGTATCA GCAGTGGCATAGACCAAATTCGGGGCTGTCTCAGGCGTAACACCTTCCGGATACTTGATGGTCGAAGGGTTGACAGACAC ATTGAACACAGAGCTGTTCATATGGAGGTATTTCAGATCATTCACCCAAGTCCTACCCAGGGTGTCATTTTGAGCAGTGA TCAAAGGACCCCCCATGTTCACCCGATAAACGGTTTCAAAGGCAAGTTCAGAAAGTCCAGAAAACGGTGCTATCGGGTCA ACAGCCAATGCCTGATCAGCAAACAACTCATTTGGCATCGACACAACTTCAATTGCATTGACAAAGGCAACTGAACCATT TGAAGGAATGAAGGTCATAACCAATATATCCGAAGTAACATTGATTGCATACTCCTTGAACATAAAAGAACCCTTGTGCT TCTTAAAGCTGAAGTTGCTCAAGAGAACAAAATCATCAGTAACCACTGTTAATGAAGCAGAAGTCAAATCATGGCTGGAT TTGGGAAGAGGGGAAAAATATAGCCTTACCCAGTGCCTACCTTCTTTCCGAATTTCAAATCGGTAAGAAGCTTTCTCGGT GAAAACCCGAGCTGATTGGTAAAATGGAAAAGGGGCATTAGAACTAGAATTGGAACTAGCAACAACAGAGTTCCCAGTTT TCAACACAAATGAAGAATGCTGTGAATCAGGAATATAAGTGTGACCTTGGAAGGTGATGTTTTGGGAAGAACCACAAGCA ATTAGATAACTCTCAGGAGGAGTGTACAATGCAAATGACCCATTAACCAGAACCAGAAAAATAACCAAAGAATAAAGAAC CCATTTTATGAGCTCCATTTTAGCTTCCCCTGAATCTTCACAAGTCCATAAACAGGTTTAAGTACTCCCAAATCACCAAA ATGGAATCCACTTGACTACAATCTCAAAATCCGGATCCAAGAAGACACCAAAACTGCAAATCCCAATCTCAAACAGGTGG TGGAGAAGTCACACAAAACCTGCAGCAACACCGGATCTATCAGAACCAATGCAAAGAAAAAGAACCACACATTTCTATTA CAAGCAAGAGACAAAATACCAAGTTCCTATAACGTCACAAACCCAACACAAAGATACAAACTTTAGCTTAATGGGTGTCT TAAAATCTAGTAAATGTGCATTTTTTCTGACGTAAGTAGATTAAACATAGGATTTCAGTTCAGCAGGTAAAAAACAAAAA AAAAACAAAAAACAAAAAACTTACCTTAATGTGAACAACCTGGTATCAAAGTGAACAAGGTTTGGATTTGGAACATTAAA GAAAGACCAAGACCCAGATTTTCAGATTACACAAATGAAGCTTGAATAGCAATACTACTGAAAACTCATCAAGTTGAGGT TTTTAGTGTGGCTGCAAACACACTTTTCCAGGCTGTTGATTAGGCTGTCATATGCAGAAGGGAAAGAGAGGACCCCACAT GGAAGAAAAGGGATGTGAAACTTCAAATCAAGTACTACTCTAGTTTCTGTTCTTCCCATAAAACCAGCTGTTCCCGCAAG ATTTTGCGGTGTGATTTTCAGAATCCAGAATCTTTGAGAAGGATTGAATTTAATAATATAGAGAGGGCATTTGGATTTGC AAAATTCATCATTTGATTTGAT
CDS sequence (LotjaGi3g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATATGTCAAGCAGCAATAGTTTAATACTGGTCCTGGTGTTGTTTGCATTCTGTTGTGAAATGCAAATGATTGCAGG AATAGACTATGTGACATGCACCTCTCTTGGTAGCCCATGCTTTGGGAAGAAAAGGGAATGCCCTTATGAGTGCCCTCTTA AATCACCATCTGACCCAAAAGCTAAAGTCTGCTATATTGACTGTTCTTCTCCCACCTGCCAAACTTATTGCAAACGTTAC AAACCAGACTGCAATGGTCGTGGATCTGCATGCTTGGACCCTCGCTTTGTTGGAGCAGATGGCATTGTTTTCTACTTCCA TGGAAGGCGCAACGAGCATTTCACCTTAGTATCTGACGCCAACCTCCAAATCAACGCCCGTTTTATCGGTCTTAGGCCTG CCGGTAGAAGCAGGGACTATACTTGGATTCAAGCATTGGGACTCCTCTTTGATTCCCACAAGTTCACTGTTGAGGCCACC CCAGCTGCTAACTGGAATGATGGAATTGACCATTTGAAGTTCTCTTACAATGGAGAGGAACTTGTCATCCCAGAAGGTTA CCTCTCTGCATGGCAATCTCCAGAAAATCAACTGAGAGTGGAAAGAACATCAAGCAAGAACAGTGTTTTGGTTAATCTGC CTGAAGTTGCAGAGATATCTATCAATGTGGTTCCTGTCACTAAGGAAGACAGTAAGATCCACAACTATCAGATTCCTGAT GATGATTGTTTTGCTCACTTGGAGGTGCAGTTCAAATTCTATGGTCTATCCTCCAAAGTGGATGGGGTTCTTGGAAGGAC TTATCAGCCTGATTTTCAGAATCCGGCGAAGCTAGGTGTGGCAATGCCAGTAGTCGGAGGGGAAGACAGGTACAGAACCT CATCACTTCTTTCTGCAGATTGTGGTGATTGTGTATTTGCTCCTGGTCAGGCTTCAGAGAAGAAGAACTCCATGATGGAA TATGGTATGCTGGATTGCACTGGTGTGGCCAACGGTGGCAATGGAATAGTTTGCAGAAGATAA
Protein sequence (LotjaGi3g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDMSSSNSLILVLVLFAFCCEMQMIAGIDYVTCTSLGSPCFGKKRECPYECPLKSPSDPKAKVCYIDCSSPTCQTYCKRY KPDCNGRGSACLDPRFVGADGIVFYFHGRRNEHFTLVSDANLQINARFIGLRPAGRSRDYTWIQALGLLFDSHKFTVEAT PAANWNDGIDHLKFSYNGEELVIPEGYLSAWQSPENQLRVERTSSKNSVLVNLPEVAEISINVVPVTKEDSKIHNYQIPD DDCFAHLEVQFKFYGLSSKVDGVLGRTYQPDFQNPAKLGVAMPVVGGEDRYRTSSLLSADCGDCVFAPGQASEKKNSMME YGMLDCTGVANGGNGIVCRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 4 | 340 | 337 | 3.9E-163 | – | |
| PANTHER | 4 | 340 | 337 | 3.9E-163 | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 21 | 27 | 7 | - | – | |
| Phobius | 28 | 340 | 313 | - | – | |
| Pfam | 250 | 306 | 57 | 2.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0321700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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