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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR010605
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.752s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0080239.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr0 31107563 31108507 -
2 domain predictions
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Lj0g3v0085029.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr0 33944955 33946695 +
2 domain predictions
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Lj0g3v0245719.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr0 127406672 127409069 +
2 domain predictions
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Lj1g3v2546260.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr1 29327931 29330458 -
2 domain predictions
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Lj3g3v0461230.1
n.a. Uncharacterized protein TCM_011920 [Theobroma cacao] gi|508710336|gb|EOY02233.1| chr3 4827376 4829984 -
2 domain predictions
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Lj3g3v0797350.1
n.a. Uncharacterized protein TCM_016143 [Theobroma cacao] gi|508777322|gb|EOY24578.1| chr3 9500445 9503240 +
2 domain predictions
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Lj3g3v0797360.1
n.a. Uncharacterized protein TCM_016143 [Theobroma cacao] gi|508777322|gb|EOY24578.1| chr3 9502333 9503886 +
2 domain predictions
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Lj3g3v2364200.1
n.a. Uncharacterized protein TCM_005214 [Theobroma cacao] gi|508703906|gb|EOX95802.1| chr3 29627961 29629587 +
2 domain predictions
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Lj4g3v3002480.1
n.a. Uncharacterized protein TCM_016385 [Theobroma cacao] gi|508777661|gb|EOY24917.1| chr4 39677576 39679219 +
2 domain predictions
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LotjaGi1g1v0103700.1
n.a. DUF1191 superfamily protein; TAIR: AT3G08600.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|I1JHN8|I1JHN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0103700 LjG1.1_chr1 16030158 16031202 +
3 domain predictions
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LotjaGi1g1v0460000.1
n.a. Nod-factor receptor 5; TAIR: AT3G08600.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes; TrEMBL-Plants: tr|I1N3C2|I1N3C2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0460000 LjG1.1_chr1 96375612 96378102 -
3 domain predictions
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LotjaGi4g1v0432300.1
n.a. transmembrane protein, putative (DUF1191); TAIR: AT4G23720.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q9PH76|UBIA_XYLFA 4-hydroxybenzoate octaprenyltransferase; TrEMBL-Plants: tr|I1K6C0|I1K6C0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0432300 LjG1.1_chr4 80695357 80697033 +
3 domain predictions
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LotjaGi5g1v0097800.1
n.a. transmembrane protein, putative (DUF1191); TAIR: AT4G22900.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase; TrEMBL-Plants: tr|A0A151SY52|A0A151SY52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0097800 LjG1.1_chr5 17511812 17515081 +
3 domain predictions
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LotjaGi5g1v0097800.2
n.a. transmembrane protein, putative (DUF1191); TAIR: AT4G22900.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase; TrEMBL-Plants: tr|A0A151SY52|A0A151SY52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0097800 LjG1.1_chr5 17511852 17515103 +
3 domain predictions
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LotjaGi5g1v0097800.3
n.a. transmembrane protein, putative (DUF1191); TAIR: AT4G22900.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase; TrEMBL-Plants: tr|A0A151SY52|A0A151SY52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0097800 LjG1.1_chr5 17511852 17515103 +
3 domain predictions
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LotjaGi6g1v0045800.1
n.a. transmembrane protein, putative (DUF1191); TAIR: AT3G08600.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|P90771|C36A1_CAEEL Probable cytochrome P450 CYP36A1; TrEMBL-Plants: tr|V7BPC6|V7BPC6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0045800 LjG1.1_chr6 8527243 8528959 -
3 domain predictions
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