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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0103700 |
| Transcript ID | LotjaGi1g1v0103700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1191 superfamily protein; TAIR: AT3G08600.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR4; TrEMBL-Plants: tr|I1JHN8|I1JHN8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0103700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:16030158..16031202) extracted from Lotus japonicus Gifu genome v1.2.
TCTAAGTGAGTTTTGTCTAAAAATTGTACCAATGAGATGGTCAGAACGACCAATTTGTTTGTGCTTCTTCTTCTTCTCTC ATTGTCATGCCTTGTGACACCTTCAAGTCCTCAGCACCCACCCGATCATGTTGCCTCGGCTCGCTTGCTCGATTCTCATC TTCAAGATTTTGCCTTTAAGGCGCTTTCGACTCCAAGAACAGGGGTGCCTTATGATGCTGAAATACCCACAAACCTAACA GGGATGAAAGTTTCAACGATGAGGCTCAGGAGTGGTAGTTTGAGAACTAGAGGGGTTTCCAGCTTCAAAGAATTTGAGAT CCCACAAGGGGTAGTTGAAATGCCTTATGTGCAAAGGCTTGTGTTGGTGTACCACAACTTAGGTAATTGGTCTGAAATTT TTTACCCTTTACCTGGTTATTCATATTTAGCTCCTGTTATAGGCTTATTAGCCTATAGTGGTGTCAATTTATCTGCTTCA GGGTTACCTGAATTGGATTTAAGAGCATCTGAGAAGCCAATTTTGGTTAAGTTCTATGATGTGAAATCAGCACCATTTGG ATCATTGGCCAAGTGTGTGTATTTTGATTTGCATGGTTCAATGCAATTTGAAACCCTATTACATGGAAATGTGTGTTCAG CAGTTCAACAAGGGCACTTCTCCATAGTTGTCGAGTCAAATGCACCGTCACCATCACCAGGGGCACTATCACCGTCCTCG GGTGATGGTGGTGGTGGGAAAATTGGGAGGAAGAAATTCAAGTGGAAGATTGTGGTGCCATGTTTGGTTGGTGGGATTGT GTTGTTGGGTTTGTTGATTTATAAAGTGAGAAGAGCCAGACAAGATGCAAAAATAAGGAAAATGGAATTAACTGCTGAGA GAAATGAAAGTTTGATAATGGCTTCCATTGGTGATAGCAAAGCACCAATTGCACTATGGACTCGTACAAGTCCAGTGATA GAAAATGATTATGTTCCTTAGATTTAATAGCATGTTTGGATCGGTTTATATTTACTCACAATCAATTATGAAACTCTAAA ATTAC
CDS sequence (LotjaGi1g1v0103700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAGAACGACCAATTTGTTTGTGCTTCTTCTTCTTCTCTCATTGTCATGCCTTGTGACACCTTCAAGTCCTCAGCA CCCACCCGATCATGTTGCCTCGGCTCGCTTGCTCGATTCTCATCTTCAAGATTTTGCCTTTAAGGCGCTTTCGACTCCAA GAACAGGGGTGCCTTATGATGCTGAAATACCCACAAACCTAACAGGGATGAAAGTTTCAACGATGAGGCTCAGGAGTGGT AGTTTGAGAACTAGAGGGGTTTCCAGCTTCAAAGAATTTGAGATCCCACAAGGGGTAGTTGAAATGCCTTATGTGCAAAG GCTTGTGTTGGTGTACCACAACTTAGGTAATTGGTCTGAAATTTTTTACCCTTTACCTGGTTATTCATATTTAGCTCCTG TTATAGGCTTATTAGCCTATAGTGGTGTCAATTTATCTGCTTCAGGGTTACCTGAATTGGATTTAAGAGCATCTGAGAAG CCAATTTTGGTTAAGTTCTATGATGTGAAATCAGCACCATTTGGATCATTGGCCAAGTGTGTGTATTTTGATTTGCATGG TTCAATGCAATTTGAAACCCTATTACATGGAAATGTGTGTTCAGCAGTTCAACAAGGGCACTTCTCCATAGTTGTCGAGT CAAATGCACCGTCACCATCACCAGGGGCACTATCACCGTCCTCGGGTGATGGTGGTGGTGGGAAAATTGGGAGGAAGAAA TTCAAGTGGAAGATTGTGGTGCCATGTTTGGTTGGTGGGATTGTGTTGTTGGGTTTGTTGATTTATAAAGTGAGAAGAGC CAGACAAGATGCAAAAATAAGGAAAATGGAATTAACTGCTGAGAGAAATGAAAGTTTGATAATGGCTTCCATTGGTGATA GCAAAGCACCAATTGCACTATGGACTCGTACAAGTCCAGTGATAGAAAATGATTATGTTCCTTAG
Protein sequence (LotjaGi1g1v0103700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRTTNLFVLLLLLSLSCLVTPSSPQHPPDHVASARLLDSHLQDFAFKALSTPRTGVPYDAEIPTNLTGMKVSTMRLRSG SLRTRGVSSFKEFEIPQGVVEMPYVQRLVLVYHNLGNWSEIFYPLPGYSYLAPVIGLLAYSGVNLSASGLPELDLRASEK PILVKFYDVKSAPFGSLAKCVYFDLHGSMQFETLLHGNVCSAVQQGHFSIVVESNAPSPSPGALSPSSGDGGGGKIGRKK FKWKIVVPCLVGGIVLLGLLIYKVRRARQDAKIRKMELTAERNESLIMASIGDSKAPIALWTRTSPVIENDYVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| ProSiteProfiles | 1 | 18 | 18 | 5.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 4 | 314 | 311 | 1.5E-148 | ||
| PANTHER | 4 | 314 | 311 | 1.5E-148 | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 244 | 219 | - | – | |
| Pfam | 33 | 213 | 181 | 4.8E-66 | ||
| Phobius | 245 | 264 | 20 | - | – | |
| TMHMM | 245 | 264 | 20 | - | – | |
| Phobius | 265 | 314 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0103700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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