Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0097800 |
Transcript ID | LotjaGi5g1v0097800.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | transmembrane protein, putative (DUF1191); TAIR: AT4G22900.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase; TrEMBL-Plants: tr|A0A151SY52|A0A151SY52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0097800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17511812..17515081) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAATTAATTTTTAATATGATAATTGTTCTTCTCCAGATGGGTCGTCTCTGCAACTTCCTCTTCTCTTATCTAGTCTG GAAATTCTCCCTCACCAGCGTCAACACCTGCACTTTGAGAACCACAACCATGGATTTGCTCACAACCTCTCCTACACACC TTTCATCTTCGCTTCCCTTCTCTCCTTCTCCCTCTCCCGCACGCATTAGCGCCCTTTTCTCAAAGCCACCCACTTCCTCA TTCAACCCAAAATCCCCTTCCCCTTCACCATGTCACTGAACAATCCCACTCAGGTGCGTCCTCACCGCGTCACCAAAACA CTCCAAAAACGCAGACTTTGAGTCTGAATCTCAGAAACCCATAATCATTTTTCAAATATCTTCACCCATACGCCGGCCAC GGCCATGAGAGGCCCAAAAACCGATGCCATAGGGCTGTTTCTGAGGGAGAGAATCGTGTTCTTGGGGAGCGGCATCGATG ACTTTGTGGCTGATGCTATCATGAGTCAATTGCTGCTCTTGGATGCTCAAGACCCCTGTAAAGATATCAAGCTTTTCATT TATTCACCTGGTGGCTCTCTCAGGTGAGAAAAGATTGATTCCTTTTTCCTCTGTAGCTCTCGGTTGCCCACAATTTATGT CTTAGAATGGGATTAGGGTTTATGAAAATGGTCGAAAATGTATGGAGAAGACAGATGTGAAGTCTTTTGCTTGGATTAAA TTTTCCTTGGTTCAAGATATCAAGGTCTGTTCCCCTTTTGTTATTGTTTCACGATCTTTTTGAAGTTTTGAATTATGAAC GAATTTCTGTAACAGGTTTAGAAATTACTGGATTTATATTCATAAAGTTTTGATTTTTCAACGCATTTTGATCCATTTTT GTTCATCTTCATGTCCTGTGTTGTGCGATTTGTGAATCTCCTCTTGATCAATGAAAGAGAACGAAAATGGAAGACTTAAA GGGTGATATTTAGGTTCCTCCTCTCTGAAAGATGAAGAATTGAAGATGAAGAAGTGTGAGATTAGAATTTACTGGTGTGT TGAAGATGAACCAAGAACAATAGAATATGAACCAACAATGTCTGTTTCAATCTTCAAACTAAATCTCACTCATGGTAAAA ACTCATATTAATCTAAGGCAACTTTCTAACAATTGCTAAAAAACCCTTCTCAAAATTAATATCACAAATTATTTCAAATT TATAGAAAAAACGGAAATTGATGGAAAATAAAAAATATGGTATAATAATTGCCACATGTCTCTTTTTTATTTGACAGACC ACATGGAGGCACCACACCCACATTTTCCCACAGGCACCACAGAATTCACCCTTATATTATTTTCAGCAAATCTGCCTTTA ATTTTCAGTGAGAAAAAGGTCTTGTGTATGTATGATAAGCCTAACACTAGAGATCCATTGAGTGCTACAAGAGTACAAGT GGGAGACACAGCATGTTATACAAAACACAATTAGTGTTCTTGGACCCCATTCACAACAACAACACTTTTGTTTCATTTTT CAGCACGCTTAAACCCTTCCTCTCCGCGCCCTTTTTATTTGTTTATGCCATTTTGCTTTATTTCACCATGAAGTGTCATC ATCATTCAACACCAACGAATCATTTCTTCCACAATCACAGGTAGATGGACAACAGTTAATCTTCCTTTTCCCTTCTCTTT TTGGTTCAGTGTCTCTTTTTCTTCTGGTATTTGAATTTGACTGTGCCACTTATTGCATTACTACAAGATGCAATTGCTTT GACAAGAACAGCATTTGAGTTCAGATAAAAGAACATGTACTTTGTGTTAGTGTTAGCCTTTTCATTTCCTTGATCTGGTG TTTTCCATCCTCACCTTTCTCACCTACAAACTTTTCGAAAATTTTCCTGACTGAGACTCTCATTCCATAGAGGCATAGAC TTAGATTCATGATTTAGTCATTGTCTTCCGATAGGAAAATAATCAAAGCTTTTTCCTCCTATGTTGTATAGCCATAGATA GGTTCTGTTAATAAAGCTTGGCTATTTTGTCTCATGGGCTCTGCTTTTCCTCTGTTTCTAATGATATTTTCCTGGGTATC ACTGACATTACCAGGATCTGATTCTCAGAGTGTCACATCAGTTCATGTTCTTGACCTCATGATAAGAGATCACACATTCA AGTCACTGGACAAAAACTTGAGGACAGGAACAGCACAGTCAGTGAAGTTACCTGCAAATTTTTCTGGCATCAGTGTTGAT ATTGTGAGGTTCAGATGTGGCAGTTTGAGAAGGTATGGTACAAACTTAAAGGAATTTCATCTGGGTATTGGTGTGACTGT GCATCCATGTATTGAGAGAGTCATGTTGATCAGACAAAACATGGGGTATAACTGGTCTTCTATATATTATTCTAACTATG ATCTAACTGGGTATCAGCTTGTTTCCCCAATTTTGGGACTCCTAGCTTACAATGCTGATGAGGATTATGCAAACTCAAGC AACCCTTTTCAACTTGGGATTGTGGCTGGAGAAAAACCCATCACAATTGATTTCACCAATGTTACAAAGTTCAACAATGA TGATGGGATGAAAGTGAAACCAACATTGTGTGCCAGTTTTGAAGGGGATGGGAGAATGACACTAGCAAAAACAAACCCTT CAAAACCTTTTGTTTGTGCTGCAAAGAGACATGGCCATTTTGGTTTAGTTGTGGAGTATTATTCTCCACCTCCACCAGAT CAGTTCAGAAAGCCTATAAGTCAGTGGAAAGTGGCAGTAGGCAGTACCATTGGTGCTGCATTGGGTGCTTTTCTTCTAGG ACTGCTTCTTGTGGCAATGCTTGTGAGGGTGAAGAAGAGATCAAGAATGGTGGAGATGGAGAGAAGGGCCTATGAAGAAG AAGCTCTTCAGGTGTCAATGGTTGGACATGTGAGGGCTCCTACAGCACCTGGCACTCGAACGACACCGACAATTGAGCAT GAGTATATAACTCATCGTCCTCGCTGAGAAGCTTTGATTGTGTTGCTGATTCAATCAATTTTGTAACATTAAGATGACAT TCAATCAAATTTATCATAGGCCAAAACTGAAATTGTATCATTAGTAGTACTATAAGACCAGTTTTCCAAATAGAGGACTT TCGATCCCTACATTCTGCTGATTCATTCACAGTTCTTTTTCTTCCCTCTGTTTGAAATGCTAGGATCCACACTGTTTTCT CTAATTATACTCACTACCTGTATGACTCTACAATTGGTTTTTTTTTAATTGAAGTCTAGTACTGCTTGCA
CDS sequence (LotjaGi5g1v0097800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTCTGCTTTTCCTCTGTTTCTAATGATATTTTCCTGGGTATCACTGACATTACCAGGATCTGATTCTCAGAGTGT CACATCAGTTCATGTTCTTGACCTCATGATAAGAGATCACACATTCAAGTCACTGGACAAAAACTTGAGGACAGGAACAG CACAGTCAGTGAAGTTACCTGCAAATTTTTCTGGCATCAGTGTTGATATTGTGAGGTTCAGATGTGGCAGTTTGAGAAGG TATGGTACAAACTTAAAGGAATTTCATCTGGGTATTGGTGTGACTGTGCATCCATGTATTGAGAGAGTCATGTTGATCAG ACAAAACATGGGGTATAACTGGTCTTCTATATATTATTCTAACTATGATCTAACTGGGTATCAGCTTGTTTCCCCAATTT TGGGACTCCTAGCTTACAATGCTGATGAGGATTATGCAAACTCAAGCAACCCTTTTCAACTTGGGATTGTGGCTGGAGAA AAACCCATCACAATTGATTTCACCAATGTTACAAAGTTCAACAATGATGATGGGATGAAAGTGAAACCAACATTGTGTGC CAGTTTTGAAGGGGATGGGAGAATGACACTAGCAAAAACAAACCCTTCAAAACCTTTTGTTTGTGCTGCAAAGAGACATG GCCATTTTGGTTTAGTTGTGGAGTATTATTCTCCACCTCCACCAGATCAGTTCAGAAAGCCTATAAGTCAGTGGAAAGTG GCAGTAGGCAGTACCATTGGTGCTGCATTGGGTGCTTTTCTTCTAGGACTGCTTCTTGTGGCAATGCTTGTGAGGGTGAA GAAGAGATCAAGAATGGTGGAGATGGAGAGAAGGGCCTATGAAGAAGAAGCTCTTCAGGTGTCAATGGTTGGACATGTGA GGGCTCCTACAGCACCTGGCACTCGAACGACACCGACAATTGAGCATGAGTATATAACTCATCGTCCTCGCTGA
Protein sequence (LotjaGi5g1v0097800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSAFPLFLMIFSWVSLTLPGSDSQSVTSVHVLDLMIRDHTFKSLDKNLRTGTAQSVKLPANFSGISVDIVRFRCGSLRR YGTNLKEFHLGIGVTVHPCIERVMLIRQNMGYNWSSIYYSNYDLTGYQLVSPILGLLAYNADEDYANSSNPFQLGIVAGE KPITIDFTNVTKFNNDDGMKVKPTLCASFEGDGRMTLAKTNPSKPFVCAAKRHGHFGLVVEYYSPPPPDQFRKPISQWKV AVGSTIGAALGAFLLGLLLVAMLVRVKKRSRMVEMERRAYEEEALQVSMVGHVRAPTAPGTRTTPTIEHEYITHRPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 24 | 24 | - | – | |
Phobius | 1 | 24 | 24 | - | – | |
Phobius | 1 | 6 | 6 | - | – | |
PANTHER | 3 | 311 | 309 | 1.2E-123 | ||
PANTHER | 3 | 311 | 309 | 1.2E-123 | – | |
Phobius | 7 | 19 | 13 | - | – | |
Phobius | 20 | 24 | 5 | - | – | |
Phobius | 25 | 239 | 215 | - | – | |
Pfam | 28 | 221 | 194 | 4.5E-62 | ||
Phobius | 240 | 264 | 25 | - | – | |
TMHMM | 241 | 263 | 23 | - | – | |
Coils | 263 | 283 | 21 | - | – | |
Phobius | 265 | 317 | 53 | - | – | |
MobiDBLite | 295 | 317 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0097800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…