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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0460000 |
| Transcript ID | LotjaGi1g1v0460000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nod-factor receptor 5; TAIR: AT3G08600.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes; TrEMBL-Plants: tr|I1N3C2|I1N3C2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0460000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96375612..96378102) extracted from Lotus japonicus Gifu genome v1.2.
AGACACCTAAGTTTGAGTGATTTAACCCGTTTTTTACCTTTGATAAGACAACCCCAAATTAAAAACCTTTACATGGAAGA ATAGGAACACTTTTCTTCTGTTTCCCATTTCACTTTCTTGCTGTTCTTACTTTCTCTCTCACGCTCACTCACACTTTGCC TTTCTGTCTTCTATTATTATCATTATTGTTTTCTGGTTTGCTTGGCTGGTGTGCCCCATTTCCCAAGTGGCCATATACAA CTCCAGAAGTAGAAACCTATCATCTCCACAGTCCACACCCTTTATCTCACTCACTCACTCACTCATTCACAGCTCAACCA GCATTTGCTTCTGACACCAAAACAACACTCCCTACCCTATTCTTCTCTTCCCCATTAATAACTCACCTGCTACAGTAGCT GCTACAGTAGTAGCAGGAACAAGAGGCATTCACTCACATTCACTGTAGCCAGAAATTATAAAAAAAAAAAGAATGAATGA ATCCAGCATCAGCATCATCCACCACTATCAATCATTAACTAGGACTTGACTTCCCATGTCTCCTTCAGTCATTGTCCACT AGATTTACCCAAATTGCAGCCCAATGGGGATGGTTTTCTTCAAGATTGTTGGCACCTTCAAACCTTCTTTTGTAGGCTCA TGTTTGGAGTTGCTTTGAGGCCAAGGTGTTTGTGTTTTGAGCTCAAGGAAATAGCTTCTGAAATCCTCAAAAGGCACTTA TTTTTTTGCCAGGTAATTACTCTGCTTTGTCTTTGCTGTATCCCACTTCCAAAATCCAACTGGGACCTGGATCTTGCCAC TGAGAATCTCTATTTTGATCAACAACATTGTTTTCAGCTTCAGGGTATATTGTTCTCTTGTAAGACTTTGTTGAGTTGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTCCAGAAGGCTAGAACTTGAAGAACACTGCTGCCAAGTA TTGAGTGAAACTTGACCGTTTGCTTAGTATTCATGAGAGAAAAGATTTGAATTCCAACAGTTGAAACTGCCCCAAGAGAA TAATTGTCTTTATGACAGCAAAACGTGCCTGAAAGTTTCAATTTTTAAGATCCCCATTGAAGAAATTTATTGCTTTTCTT TCAGTTATGATTTGCTCAGTATAAATTGCATTGGAGTTACATCTCTAAGTCCAAGGTGAATTGTTAAAATTCCCAAAAGC ATCCATGAAGCTTAATCTTCTTCTTCCAAGCCTAGTGATGCTTGTTCTTGTTCTTCTTCTGTGTTTTGAATCACTTCCTC ATATAAGGGCTCAATCCACTACTTCTTCAGCAAAGGCCTTGGATGCAGTTCTGCAGCAATATGCTTACAAGGTTTTGGTG AATCCAAAAACAGGTACTATTTACAATGCAACTCAACTTCCATCCAATTTGACTGGGATTGAAGTTTCAGCATTGAGATT AAGGAGTGGCAGTTTGAAGAGAAAAGGGTTCAAGATGTACAATGAATTTGAAATCCCTCAGGGACTCATAGTGAGCACCT ATGTAGAAAGACTGGTTTTGGTGTATCAAAATCTGGGAAAATTTTCCACCAGGTACTATCCATTGGCTAATCACACATAC TTGACTCCAGTGCTAGGGCTGCTAGTTTATGATAGTTCGAATTTGTCGGCTACGAATTTATCAGAACTGGATATAAGTGC TTCTGGTGACCCCATTTTGGTCAAGTTCAGGAATGTAAAACCAGCTCCTCATGGTGCTGTTGCAGAATGTGTTTGGTTTG ATTTGAAGGGTTCTTCCAGTTTCAGCATTGTAACAGGAGGCAACACATGTTCTACTTCTCAACAGGGTCATTTCTCAATA GTGGTCAAATCCACTACTCCTCCAGCACCACCAGTACCAAGTGCTCATGGAGGTAAGAAGAAGAGTGGAAAAGTGTGGAT TATTGTTGGTTCTATCATTGGAGGACTAGCATTGCTGGTTTTGTTGTTGTTTCTAGCTTTGTGGATGAACAAGTGTACAA AAAAGAAGAAAATGCAAAGGATGGAAAGGGTTGCTGAATTGGGAGAACCTCTTCAAATGGCCTCAGTTGGGGATACAAAA GCACCTGCTGCAACAGTTACAAGAACACAACCAACCCTTGAACATGAATATGCACCGTGATACAATATTTTTGCACAATC TTCACTTGTCTTTCCCTTTCATATTCAGGTTAATTTACTGTAGTCAGAAATTCTTCGAATGCCACTTTGCTTCACATAGG ATTTTTGTGTAAATCTGTTATCTTTTTTTACTGATCCATTGTGGTGTGATTCTACTAGCCAAAATTCAAAAGTGTTGATT ACTTGATTATGTGATGAATTCAGTTGTTCTATTGAGGAAGAATAAAACTGCAGCACCTACTTCTGGGATTATTTTACTTG TTTTTCTTTATTATCTTCTTCATGTAGTTGAAAATTGATAGCTTGATATAAATGTTGTGGTCACAATGCTGTGCTGGTTG GCTCAGCCACC
CDS sequence (LotjaGi1g1v0460000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTTAATCTTCTTCTTCCAAGCCTAGTGATGCTTGTTCTTGTTCTTCTTCTGTGTTTTGAATCACTTCCTCATAT AAGGGCTCAATCCACTACTTCTTCAGCAAAGGCCTTGGATGCAGTTCTGCAGCAATATGCTTACAAGGTTTTGGTGAATC CAAAAACAGGTACTATTTACAATGCAACTCAACTTCCATCCAATTTGACTGGGATTGAAGTTTCAGCATTGAGATTAAGG AGTGGCAGTTTGAAGAGAAAAGGGTTCAAGATGTACAATGAATTTGAAATCCCTCAGGGACTCATAGTGAGCACCTATGT AGAAAGACTGGTTTTGGTGTATCAAAATCTGGGAAAATTTTCCACCAGGTACTATCCATTGGCTAATCACACATACTTGA CTCCAGTGCTAGGGCTGCTAGTTTATGATAGTTCGAATTTGTCGGCTACGAATTTATCAGAACTGGATATAAGTGCTTCT GGTGACCCCATTTTGGTCAAGTTCAGGAATGTAAAACCAGCTCCTCATGGTGCTGTTGCAGAATGTGTTTGGTTTGATTT GAAGGGTTCTTCCAGTTTCAGCATTGTAACAGGAGGCAACACATGTTCTACTTCTCAACAGGGTCATTTCTCAATAGTGG TCAAATCCACTACTCCTCCAGCACCACCAGTACCAAGTGCTCATGGAGGTAAGAAGAAGAGTGGAAAAGTGTGGATTATT GTTGGTTCTATCATTGGAGGACTAGCATTGCTGGTTTTGTTGTTGTTTCTAGCTTTGTGGATGAACAAGTGTACAAAAAA GAAGAAAATGCAAAGGATGGAAAGGGTTGCTGAATTGGGAGAACCTCTTCAAATGGCCTCAGTTGGGGATACAAAAGCAC CTGCTGCAACAGTTACAAGAACACAACCAACCCTTGAACATGAATATGCACCGTGA
Protein sequence (LotjaGi1g1v0460000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLNLLLPSLVMLVLVLLLCFESLPHIRAQSTTSSAKALDAVLQQYAYKVLVNPKTGTIYNATQLPSNLTGIEVSALRLR SGSLKRKGFKMYNEFEIPQGLIVSTYVERLVLVYQNLGKFSTRYYPLANHTYLTPVLGLLVYDSSNLSATNLSELDISAS GDPILVKFRNVKPAPHGAVAECVWFDLKGSSSFSIVTGGNTCSTSQQGHFSIVVKSTTPPAPPVPSAHGGKKKSGKVWII VGSIIGGLALLVLLLFLALWMNKCTKKKKMQRMERVAELGEPLQMASVGDTKAPAATVTRTQPTLEHEYAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 38 | 38 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 5 | 20 | 16 | - | – | |
| PANTHER | 7 | 311 | 305 | 1.6E-139 | ||
| PANTHER | 7 | 311 | 305 | 1.6E-139 | – | |
| Phobius | 21 | 38 | 18 | - | – | |
| Pfam | 34 | 215 | 182 | 2.1E-67 | ||
| Phobius | 39 | 236 | 198 | - | – | |
| Phobius | 237 | 260 | 24 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 261 | 311 | 51 | - | – | |
| MobiDBLite | 290 | 311 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0460000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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