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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0097800 |
| Transcript ID | LotjaGi5g1v0097800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1191); TAIR: AT4G22900.1 transmembrane protein, putative (DUF1191); Swiss-Prot: sp|Q0AHU2|HEM1_NITEC Glutamyl-tRNA reductase; TrEMBL-Plants: tr|A0A151SY52|A0A151SY52_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0097800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17511852..17515103) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTCGTCTCTGCAACTTCCTCTTCTCTTATCTAGTCTGGAAATTCTCCCTCACCAGCGTCAACACCTGCACTTTGAGA ACCACAACCATGGATTTGCTCACAACCTCTCCTACACACCTTTCATCTTCGCTTCCCTTCTCTCCTTCTCCCTCTCCCGC ACGCATTAGCGCCCTTTTCTCAAAGCCACCCACTTCCTCATTCAACCCAAAATCCCCTTCCCCTTCACCATGTCACTGAA CAATCCCACTCAGGTGCGTCCTCACCGCGTCACCAAAACACTCCAAAAACGCAGACTTTGAGTCTGAATCTCAGAAACCC ATAATCATTTTTCAAATATCTTCACCCATACGCCGGCCACGGCCATGAGAGGCCCAAAAACCGATGCCATAGGGCTGTTT CTGAGGGAGAGAATCGTGTTCTTGGGGAGCGGCATCGATGACTTTGTGGCTGATGCTATCATGAGTCAATTGCTGCTCTT GGATGCTCAAGACCCCTGTAAAGATATCAAGCTTTTCATTTATTCACCTGGTGGCTCTCTCAGGTGAGAAAAGATTGATT CCTTTTTCCTCTGTAGCTCTCGGTTGCCCACAATTTATGTCTTAGAATGGGATTAGGGTTTATGAAAATGGTCGAAAATG TATGGAGAAGACAGATGTGAAGTCTTTTGCTTGGATTAAATTTTCCTTGGTTCAAGATATCAAGGTCTGTTCCCCTTTTG TTATTGTTTCACGATCTTTTTGAAGTTTTGAATTATGAACGAATTTCTGTAACAGGTTTAGAAATTACTGGATTTATATT CATAAAGTTTTGATTTTTCAACGCATTTTGATCCATTTTTGTTCATCTTCATGTCCTGTGTTGTGCGATTTGTGAATCTC CTCTTGATCAATGAAAGAGAACGAAAATGGAAGACTTAAAGGGTGATATTTAGGTTCCTCCTCTCTGAAAGATGAAGAAT TGAAGATGAAGAAGTGTGAGATTAGAATTTACTGGTGTGTTGAAGATGAACCAAGAACAATAGAATATGAACCAACAATG TCTGTTTCAATCTTCAAACTAAATCTCACTCATGGTAAAAACTCATATTAATCTAAGGCAACTTTCTAACAATTGCTAAA AAACCCTTCTCAAAATTAATATCACAAATTATTTCAAATTTATAGAAAAAACGGAAATTGATGGAAAATAAAAAATATGG TATAATAATTGCCACATGTCTCTTTTTTATTTGACAGACCACATGGAGGCACCACACCCACATTTTCCCACAGGCACCAC AGAATTCACCCTTATATTATTTTCAGCAAATCTGCCTTTAATTTTCAGTGAGAAAAAGGTCTTGTGTATGTATGATAAGC CTAACACTAGAGATCCATTGAGTGCTACAAGAGTACAAGTGGGAGACACAGCATGTTATACAAAACACAATTAGTGTTCT TGGACCCCATTCACAACAACAACACTTTTGTTTCATTTTTCAGCACGCTTAAACCCTTCCTCTCCGCGCCCTTTTTATTT GTTTATGCCATTTTGCTTTATTTCACCATGAAGTGTCATCATCATTCAACACCAACGAATCATTTCTTCCACAATCACAG GTAGATGGACAACAGTTAATCTTCCTTTTCCCTTCTCTTTTTGGTTCAGTGTCTCTTTTTCTTCTGGTATTTGAATTTGA CTGTGCCACTTATTGCATTACTACAAGATGCAATTGCTTTGACAAGAACAGCATTTGAGTTCAGATAAAAGAACATGTAC TTTGTGTTAGTGTTAGCCTTTTCATTTCCTTGATCTGGTGTTTTCCATCCTCACCTTTCTCACCTACAAACTTTTCGAAA ATTTTCCTGACTGAGACTCTCATTCCATAGAGGCATAGACTTAGATTCATGATTTAGTCATTGTCTTCCGATAGGAAAAT AATCAAAGCTTTTTCCTCCTATGTTGTATAGCCATAGATAGGTTCTGTTAATAAAGCTTGGCTATTTTGTCTCATGGGCT CTGCTTTTCCTCTGTTTCTAATGATATTTTCCTGGGTATCACTGACATTACCAGGATCTGATTCTCAGAGTGTCACATCA GTTCATGTTCTTGACCTCATGATAAGAGATCACACATTCAAGTCACTGGACAAAAACTTGAGGACAGGAACAGCACAGTC AGTGAAGTTACCTGCAAATTTTTCTGGCATCAGTGTTGATATTGTGAGGTTCAGATGTGGCAGTTTGAGAAGGTATGGTA CAAACTTAAAGGAATTTCATCTGGGTATTGGTGTGACTGTGCATCCATGTATTGAGAGAGTCATGTTGATCAGACAAAAC ATGGGGTATAACTGGTCTTCTATATATTATTCTAACTATGATCTAACTGGGTATCAGCTTGTTTCCCCAATTTTGGGACT CCTAGCTTACAATGCTGATGAGGATTATGCAAACTCAAGCAACCCTTTTCAACTTGGGATTGTGGCTGGAGAAAAACCCA TCACAATTGATTTCACCAATGTTACAAAGTTCAACAATGATGATGGGATGAAAGTGAAACCAACATTGTGTGCCAGTTTT GAAGGGGATGGGAGAATGACACTAGCAAAAACAAACCCTTCAAAACCTTTTGTTTGTGCTGCAAAGAGACATGGCCATTT TGGTTTAGTTGTGGAGTATTATTCTCCACCTCCACCAGATCAGTTCAGAAAGCCTATAAGTCAGTGGAAAGTGGCAGTAG GCAGTACCATTGGTGCTGCATTGGGTGCTTTTCTTCTAGGACTGCTTCTTGTGGCAATGCTTGTGAGGGTGAAGAAGAGA TCAAGAATGGTGGAGATGGAGAGAAGGGCCTATGAAGAAGAAGCTCTTCAGGTGTCAATGGTTGGACATGTGAGGGCTCC TACAGCACCTGGCACTCGAACGACACCGACAATTGAGCATGAGTATATAACTCATCGTCCTCGCTGAGAAGCTTTGATTG TGTTGCTGATTCAATCAATTTTGTAACATTAAGATGACATTCAATCAAATTTATCATAGGCCAAAACTGAAATTGTATCA TTAGTAGTACTATAAGACCAGTTTTCCAAATAGAGGACTTTCGATCCCTACATTCTGCTGATTCATTCACAGTTCTTTTT CTTCCCTCTGTTTGAAATGCTAGGATCCACACTGTTTTCTCTAATTATACTCACTACCTGTATGACTCTACAATTGGTTT TTTTTTAATTGAAGTCTAGTACTGCTTGCAGACTGTCCAGAAGTCTTTAATC
CDS sequence (LotjaGi5g1v0097800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAGACCCCTGTAAAGATATCAAGCTTTTCATTTATTCACCTGGTGGCTCTCTCAGGATCTGATTCTCAGAGTGT CACATCAGTTCATGTTCTTGACCTCATGATAAGAGATCACACATTCAAGTCACTGGACAAAAACTTGAGGACAGGAACAG CACAGTCAGTGAAGTTACCTGCAAATTTTTCTGGCATCAGTGTTGATATTGTGAGGTTCAGATGTGGCAGTTTGAGAAGG TATGGTACAAACTTAAAGGAATTTCATCTGGGTATTGGTGTGACTGTGCATCCATGTATTGAGAGAGTCATGTTGATCAG ACAAAACATGGGGTATAACTGGTCTTCTATATATTATTCTAACTATGATCTAACTGGGTATCAGCTTGTTTCCCCAATTT TGGGACTCCTAGCTTACAATGCTGATGAGGATTATGCAAACTCAAGCAACCCTTTTCAACTTGGGATTGTGGCTGGAGAA AAACCCATCACAATTGATTTCACCAATGTTACAAAGTTCAACAATGATGATGGGATGAAAGTGAAACCAACATTGTGTGC CAGTTTTGAAGGGGATGGGAGAATGACACTAGCAAAAACAAACCCTTCAAAACCTTTTGTTTGTGCTGCAAAGAGACATG GCCATTTTGGTTTAGTTGTGGAGTATTATTCTCCACCTCCACCAGATCAGTTCAGAAAGCCTATAAGTCAGTGGAAAGTG GCAGTAGGCAGTACCATTGGTGCTGCATTGGGTGCTTTTCTTCTAGGACTGCTTCTTGTGGCAATGCTTGTGAGGGTGAA GAAGAGATCAAGAATGGTGGAGATGGAGAGAAGGGCCTATGAAGAAGAAGCTCTTCAGGTGTCAATGGTTGGACATGTGA GGGCTCCTACAGCACCTGGCACTCGAACGACACCGACAATTGAGCATGAGTATATAACTCATCGTCCTCGCTGA
Protein sequence (LotjaGi5g1v0097800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKTPVKISSFSFIHLVALSGSDSQSVTSVHVLDLMIRDHTFKSLDKNLRTGTAQSVKLPANFSGISVDIVRFRCGSLRR YGTNLKEFHLGIGVTVHPCIERVMLIRQNMGYNWSSIYYSNYDLTGYQLVSPILGLLAYNADEDYANSSNPFQLGIVAGE KPITIDFTNVTKFNNDDGMKVKPTLCASFEGDGRMTLAKTNPSKPFVCAAKRHGHFGLVVEYYSPPPPDQFRKPISQWKV AVGSTIGAALGAFLLGLLLVAMLVRVKKRSRMVEMERRAYEEEALQVSMVGHVRAPTAPGTRTTPTIEHEYITHRPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 16 | 311 | 296 | 3.6E-122 | – | |
| PANTHER | 16 | 311 | 296 | 3.6E-122 | ||
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 239 | 215 | - | – | |
| Pfam | 28 | 221 | 194 | 4.5E-62 | ||
| Phobius | 240 | 264 | 25 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Coils | 263 | 283 | 21 | - | – | |
| Phobius | 265 | 317 | 53 | - | – | |
| MobiDBLite | 295 | 317 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0097800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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