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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011054
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.509s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0078859.1
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 30414696 30419877 -
2 domain predictions
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Lj0g3v0078859.2
n.a. PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1| chr0 30414696 30421656 -
2 domain predictions
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Lj1g3v4093410.1
n.a. cytochrome f [Lotus japonicus] gi|13518451|ref|NP_084811.1| chr1 48490857 48491304 -
2 domain predictions
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Lj4g3v3015020.1
n.a. PREDICTED: biotin carboxylase 1, chloroplastic-like [Cicer arietinum] gi|502138858|ref|XP_004503555.1| chr4 40296573 40303908 -
2 domain predictions
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Lj5g3v1003320.1
n.a. PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X2 [Cicer arietinum] gi|502115337|ref|XP_004495179.1| chr5 15781280 15787890 -
2 domain predictions
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Lj5g3v2263910.1
n.a. PREDICTED: phosphoribosylamine--glycine ligase, chloroplastic-like isoform X2 [Cicer arietinum] gi|502123844|ref|XP_004498282.1| chr5 33014193 33017626 -
2 domain predictions
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LotjaGi1g1v0246300.2
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093162 59109061 +
2 domain predictions
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LotjaGi1g1v0246300.3
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59093322 59109042 +
2 domain predictions
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LotjaGi1g1v0246300.4
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|I1JVH6|I1JVH6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
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LotjaGi1g1v0246300.5
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59094710 59108673 +
2 domain predictions
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LotjaGi1g1v0246300.6
n.a. Acetyl-CoA carboxylase; TAIR: AT1G36160.1 acetyl-CoA carboxylase 1; Swiss-Prot: sp|Q38970|ACC1_ARATH Acetyl-CoA carboxylase 1; TrEMBL-Plants: tr|A0A0R0K6S7|A0A0R0K6S7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0246300 LjG1.1_chr1 59097181 59108583 +
2 domain predictions
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LotjaGi1g1v0659500_LC.1
n.a. Cytochrome f; TAIR: ATCG00540.1 photosynthetic electron transfer A (ChrC); Swiss-Prot: sp|Q9BBR8|CYF_LOTJA Cytochrome f; TrEMBL-Plants: tr|A0A023INB7|A0A023INB7_LENCU Cytochrome f; Found in the gene: LotjaGi1g1v0659500_LC LjG1.1_chr1 122050673 122051007 -
2 domain predictions
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LotjaGi4g1v0439600.1
n.a. Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr|O23960|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600 LjG1.1_chr4 81327820 81335253 -
2 domain predictions
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LotjaGi4g1v0439600.2
n.a. Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr|O23960|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600 LjG1.1_chr4 81329353 81335044 -
2 domain predictions
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LotjaGi5g1v0170200.1
n.a. Acetyl-CoA carboxylase, putative; TAIR: AT1G03090.2 methylcrotonyl-CoA carboxylase alpha chain; Swiss-Prot: sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; TrEMBL-Plants: tr|A0A151QXF8|A0A151QXF8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0170200 LjG1.1_chr5 43773156 43782290 -
2 domain predictions
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LotjaGi5g1v0211000.1
n.a. Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr|K7LJS8|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000 LjG1.1_chr5 51522479 51529430 -
2 domain predictions
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LotjaGi5g1v0354900.1
n.a. Phosphoribosylamine-glycine ligase; TAIR: AT1G09830.1 Glycinamide ribonucleotide (GAR) synthetase; Swiss-Prot: sp|P52420|PUR2_ARATH Phosphoribosylamine--glycine ligase, chloroplastic; TrEMBL-Plants: tr|K7LJM6|K7LJM6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0354900 LjG1.1_chr5 67035087 67038946 -
2 domain predictions
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