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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0439600 |
| Transcript ID | LotjaGi4g1v0439600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Biotin carboxylase; TAIR: AT5G35360.1 acetyl Co-enzyme a carboxylase biotin carboxylase subunit; Swiss-Prot: sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic; TrEMBL-Plants: tr|O23960|O23960_SOYBN Acetyl-CoA carboxylase; Found in the gene: LotjaGi4g1v0439600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81327820..81335253) extracted from Lotus japonicus Gifu genome v1.2.
GTACATATTTTCCAACCTGATCCAAAGTCCAACTAAATTGAAGAAAAAAAAGAGATACAAGATTTTGGGCGGAGGTTTCA ATTTGGCAGCACCCTCGTTTGCATCGACACCCCCTTCCCCCACTCTTCAAAACCAACACCCAACTCAACCAACCCAAATC CATTCTCCATTCTCCATTCTTGCTTCAAGCATAGCAACAAATGGAGGCCACCATGTCCGCCTGCAAATCAATCACCTCCT CTTCCGTTCCCGTCACAGTAAGTCACTCACTCACAATCACTTTTCAGAATTCATTCCTATAATCACTTTTTCTGAATCTG ATTCGTTTTCTCAATTTCATTTCAAGGGTTTATTCGCGGGAAGACGAGGAGTGAAGAGTTCCACCCAATGCAGCTTCTTA GCTGAAACCAACAAGGTCAAATTCCCGAGGCAAGCTGCTCAGTTCAACAAGCAGCACCACCAGACTCGCCGCCACTGCGG CCCTCTCCGCGTGACTTGCGGTGGCGGCAGCGGCGAGAAGATCCTCATTGCTAACAGAGGCGAGATCGCCGTCCGTGTCA TTCGTACCGCCCATGAATTGGGGATTCCGTGTGTGGCTGTGTACTCCACCATTGACAAGGACGCGCTTCATGTCAAGCTG GCTGATGAAGCCGTTTGCATTGGTGAAGCACCCAGTAGCCAATCGTAACTCCTTTCCCTTCTTCTTCATGAATTTCACTT TCTACACAAATAAATTCGTGATGGGTACCACCCCTGTTAATCAAAATCTGTGTTTTTAAAACAATTGTAATTTCTCTCTG TGCAGCTATTTGCTGATCCCGAATGTTCTAGCTGCTGCTATTAGCCGCAAATGCACAATGTTGCATCCCGGTTATGGTTT CCTTGCTGAGAATGCAGTGTTTGTTGAGATGTGTAGGGAACATGGAATCAATTTTATTGGGCCTAATGTGAGTAGTACAC TCCATTCCACAGTTTGTTTTTTGTTTTGCTTATCGCCTCATGACTGCTTGCTTTAATTTTAAGCGTTACCGTTGAGTTTG TGAATTGTATGTAACATGATGACATTGGTTACCTTCAAAGATTGCACCCTAGATTGAATGAGACTCATTCGAACTTTCCT GTTAAATCCTAAGACTAGTTTCTGTCTAAACTATCTTGAACCACATGAATTTGATTGATTGCCGGTCATTATCGCTAGAG TTTGTGATCAACACAACTAGATAATATTAGTTTATATACACGTCAATATTGTATGATGAGGATTTATTGTTTATTTTACT GGTTTTATGTGGTGACCGCGTAAAATAATATTGGATTTTTGCAACTAAGCAAGTGTTTATTGAGTGTGGCATGGCTAGAA TAACAGCATTTTTAACCTGTATGCTGAAAATGTGCTGGCCGAGTTATGTTTGATATTGAAAATTTTCATTAAAACTTGTT GGTATGCTAGCGAAGGTCAGCGCTTTTATGCATTTTTCTAGTACGTGTGTAGTCAAAGGTGTCTGTTAATTCCAATATTT TTTTTCACTTTCAATGTATTTATCTTAATATTTAATGTTTTCCCTGTTAAATATAGAACTTCTTTGATTCATAAAGATGT CATTGAAAATCTAAGATTCTAATATTTCCCTTTCAAATTATTTGGTAAAACTGAATATTTAACTTTCAGCCTGACAGTAT TCGGGTTATGGGTGACAAAGCAACTGCCAGAGAAACAATGAAGAAAGCAAATGTTCCTACTGTTCCAGGAAGTGAGGGGC TTTTACAGGTATTGTATTAAATTCAGGTGTATAAACAGCTTTATATACCTTCAATGTGAAAGTTCGATGTCAGTTTCAGA TTCTATGGCATCAGTTTGATGATAAAAATTAATGTAACAGAGTACAGAAGAAGCTATCAGACTTGCACATGAGATTGGTT TCCCTGTGATGATCAAGGTAAATTGCCTTATTATTCTGTATCTGTAACACTGTTCCTGTTTGAATTGAATTCCCCTTTTT TTATGATTGAAAGTAGGTTATTTGATACATGCTTATATTAGATATGAGCACATACATAGATGTATATACTCTACACTCGT GTGTAACTATGTACCTATCAAAGCATAATCTTGTACATTTTGTCTTCTGATCCCCCAATCAGTAAATATGCGAGGGATAA TGAATTGAATTATACATTGCTGGCCATAGCTATGGAGGTGGTGTAAGTGATGTATGACCCCATAGGTGTGTTTATCATTT GGAATGTTGAAGAACTAGATAGTTTTTCCACTTATACAGAGTGCTCAACTTAGGACCACAATTATTTTATTTGGTTTGTG GTTCATTCATTATTGGTCTCTGATATGATCTTTCTTATGATTTATTTGATTGCTGATTTGAACCGATTACATGAGGCATA TAAGTTCCCCTACAAAGCCTTCTTTTGCTAATTTATGTGAACTGATAAACAAATGGTGCTTCTCAGGCAACAGCTGGTGG TGGAGGACGTGGCATGCGTCTTGCTAAAGAACCTGAGGAGTTTGTGAAGTTGTTACAGGTATTATTTTTGCCTGAATGAA ATTCTTGTTATGTTGTCTACATGATAAATTGCAATCTTTAGTTTCCTTTCTGTTATAAATTGTAATAGCTATAGGAAAAA GTTAAAAGGGGTAACCTGAAACTCGAATGGATTGAAATATAGAAGCCATAGTGATCAAAATTACCTATAATCAGATAAAA ACGAAAAACTGAATGAAGCGTGCAATGCTTGTACCATGTGTATATTTCTTTTGCACATCTATTTTCTGACTACGTAAAAG ATCAATATTTCTTACTTGGGTCAACAGGTGAAACAAGGTTTCCTGCAATTTTTATGTTCCAATAATTGGTATGACATGAA ACCATCTTTGTAGCAGAAGCAAGTTTCAGGGTCAAACAATCATAATTGGTTCTGATGGAAGGGAGATGATGTATTCTGAT TGTCTATAGTTGTAAAGCTTATCCCATTGATGAGAAATTTAAATGTGCTTCTTTGGTGAATAATTTTCAATTTGATTTCT ATGCAGCAAGCTAAGAGTGAGGCAGCTGCTGCATTTGGCAACGATGGAGTTTATTTGGAGAAGTACATTCAGAACCCAAG GCACATTGAGTTCCAGGTAATGTTTCCCCTTTTTCTCCCTGAAATCTTTAATTTGACTGAAGCCTTGGGTTAGGAGAATC CTTTGAGGGAATTTTATCTATTAAGAATGTAAGGAAACATTCAAGTTGGGGATTACTCAATAAGGTCAACTGTGAACTTT AGCATTAACTCAATTTAAATTGGTGCTCACTCAAAGTATGGTTAGTTTAAATTACATGCATCACATTTTGTTATTTTTTA AATAATTTAGAAACACCTTGCAGCCTCTTTTTCTGGTATATGTTACAGTAGGTAGAAGAAAAATTCTGCATTGGGGATTG GGTGAGTGGACAGTCTTAAATTTATTCGACAGATTCCTAATTGTTCGGGTGCTTTGACTTGATCCAAGACCTGAATGATT TAAAAAGCATATTAAGAAATTAGTGATAATATTGTATGTTTAATTCCTCTATTCCTCTGCTTCATGACTTACAGGTTCTT GCCGATAAATTTGGTAATGTTGTTCACTTTGGTGAGCGTGATTGCAGTATCCAGGTACTATGAACTAACTCTCTCAATTT CTTATCTGTCTGTATCAATGTTTAGTTTTTCAAGTTAGTTAGTTATATTAAGCATAATAATACTCATCTTATTTTTATTA TGATGCCATTTTACAAAAGATAAAAATATGTGTTCTGTAAACTTGTAATGTCTGACCTTAGTGAATTCAAGATCAAAACT AAATGTATACTATGAGATGTGTGTTTTCTGACTAAAGCATATATATTTTGGTCCAAAAGAAAAATGAAACTGACTGATCT TTCAGATAGAAGTCCTCCTTCAAGGATATTCAAAGATGCTATAAACTCCTTACATGCCATATGACTAAAGTATATATATC CTAAAGTCTAAACAACTATGCATTGTAAAAGATTGATGTTTCTATTTATAGTTTTTAATTATATCTTAGTTCCCTATGAA ATTCCACATGTATATCTAGTGCCTGATGTTATTGGATAATGAACACAGATACTACTTGTATGATGAATTTTTTTTTTTAA TTTAAAAAACTTGAATTTGATTTCAATGTTATTCAAGTAGTTTTATAGTTAGAGGGATAGATCAAAATGTGGCGTGATTA TTTACGTTCCCTTTTTAGCAATTGAGTTGCCAGAGATCCTACCTGAAGTAATAAGTTCTGTTAATTGTGAATTTTCATAC AGAGGCGTAATCAGAAACTGCTTGAAGAAGCACCATCTCCTGCATTGACCCCCGAGTTGCGAAAGGCAATGGGAGACGCA GCAGTTCAAGCTGCTGCATCAATTGGTTACATAGGAGTTGGAACGGTTGAGTTCCTTTTGGATGAAAGGGGTTCATTTTA CTTCATGGAGATGAACACACGTATCCAGGTTGAACATCCTGTGACAGAAATGATTTCCTCTACTGATTTGATAGAAGAGC AAATTCGTGTAGCTATGGGTGAAAAACTACGATACAAACAGGTACTCAAGGATATATTTTACTTGTGATTCTGTAGAAGC TTGCTTTTAACATAGTTTTTCTGCAGGAGGACATTGTTCTCAGAGGACATTCTATTGAATGCCGTATCAATGCAGAAGAT GCTTTTAAGGGGTTTAGACCAGGGCCAGGTATTTTTAAGAAAATTATGAAAGCAAAAATAAATTGTGTTTGCATTCTAAT ACCAGCTTCCTCACTTGTTTGGTAGTTTGGTCTATTAGCATTCTGCCATTTGAAAGTTTTATTAATCCAATGAATTTTCT CCCCACCAACAGGTAGAATAACAGCATACTTGCCATCTGGAGGTCCATTTGTCAGAATGGATAGCCATGTTTATCCTGAT TATGTAGTTCCTCCAAGCTATGACTCCCTTCTTGGAAAGGTGTGCGGTTATTTTCTCTTTTCTAACATTGATTTCTCATC ATCGTCATCTGAGTTCATTATAACGTATCTTAGTTGTTCGCTTCAATGAAATCGATGTCAATATTTAATACGAGCATATA CTAATCTTGGTCTTCTCATAAATTTCTCAATTACTTTCGAAGTTTTTTCTCGTCCTCATATGCTTGGGCTCTTGGATTTA AGCAATGATGGGATATAATTATAGAGATCAATTAGGTGATGACTTGTTTTATGTGTGAGACATTAGTTGATATAGAAGGC GATGGCTATTTGATTGAATTTTGTAAGCTAGGAGTGTAAAATGGATCCTATGATTATTAGAAAGGAGAATGATGTGTTGT ATATCGGTGTATGATTTGCATTTTATAGTCAGTATACAACAGATATCACCACCCCTCCAAAAATTAAACTTCTTTCAGTT CCTGATGATGACACATTAAATTTATCAGATGTCATAGTTTTTGATTCCCTATGCAATACAAGTGGGAAGAATGAACAGAC AAGCAAAAAACGTTCAGAGCATTCAATGAACTGCATCTAATAAAATATCCTACAAGTGTATAAATAAACCCAACTATATC TGAAGTGCTCTTTATATTTGAAACTCTTACTCATCTCTTGACTTTGTGAACATTTTGTAGCTGATTGTATGGGCACCAAC AAGAGAAAAAGCAATTGAGCGCATGAAACGGGCACTTGATGACACTATCATCACAGGTAAAATACTTTGATGTTTATGAT GGTGTTTATTATGTTAGATACCTGTGCTTCATGTAAGTCAATCTTGTGCCTGAAGCCATAAAAAACTGAAAAGAATCATA TACATTTCCTTTGCACCTTGGTATATGCACTTCGCAAAAAAAAAACAAAGTTTGTTTGACCTGAATCCTCTGCAGTTTGA AACAAATTGCAGGAGGTGCAGTTTTCTGATCTTATTCATATCCATTGAAGTGTCTTTGACATAGTGTTTATTATATGCTT TAAAGCCTTCCAGTTATCTTTATTATTGTTTTGTAGCCTTCACTTTCTATGACATAATTAACAATTACAACAATTTTGTT ACAGGAGTTCCTACAACAATTGATTATCATAAACTTATCCTTGACATTGAGGTCAGTGCATCTTTTATGTACTTTTGCTA ACACGTATTCTTTGACAATATTGTTAGTCAAAACTTGATATTATGATTAATATATGCAATATCTTCATTGTATCACAGGA TTTCAAAAATGGCAAGGTTGATACTGCTTTTATTCCAAAACACGAGGAGGAGTTGGCGGTGGTAAGAACTTCATATTTCC TTTATAGTATTTATGCCCCTATCAATGGTTTAAAATTTATATATTCTTGTTGGAGCTACTACAAAATAGTTTTGTCAGGA AAATTTCACATGAACTTGTCTTTAGAATTATACACAGGATCCTTCAATATTATCATCATGGTGCATTAAACATTAGATAT GTTATATAAAAGGAGGTAACAGTAGTTTTTTTTGTATGAAACTTTATGAAGTCCATCTACTTTATAAGAACTTTCAATTT AATAGTTGAATTGGTTTAGAAAAAAGTTACTGTTGTAAGTACAATAGTTTGTGTCCATTTATTCCATCCAATATCTGAGT ACGTGTGTAAAATTAGTCTCTAGATAACTAAATCATTGAACTGCATGCATTCTGTCAATGATTTAGTAAGCGAGAGTAAG AGTGTAAGACAATGATCCTATTGCTAACACTATTCACCAACCTTGGTAATGTGTTCTTAGATGTTTCTAAACCTTAATGT TAATGGAAAGAAACCTTCCTGTGGTATTAGTTATTGTTTACAAAATTTATACTTTGTTTGATTTTGTAATATTATTCCAT GTCCACTTCTAATGCAGCCGCCGCCGCAAAAGAGGGTACTTTCTAACACGACGAAAGAGCTAAATGGCGCAACTGCCTGA TGAATATGACTCTGATGCCACCCTATTTAAAAATTGCATTTGTAATCACTATGTCGTCTGTGTGTGCATGTGAAAGTTCT CAGGAAATTTTGATAATTAGTCTCCCTCAATTCTCTTTGTTCAATAATCATATTGTAAAATCAATTAATTTAATGTTCAA TTTCATCCCGAATATCAGTGCAAGCCTGCAATGATATGGCTCACTTTGCATTTTCTTTCAGGTTGTAGTTGTCACAATGG TTTCTTAGAGGATGTGTCTGCGGTCTTGTTTGTAATTGTATTTAAGAACTCTATTTTAGATACAGCAATAAAAATTAAAC CTTATCCTAGTAAGTTGAGTTTGCTTCATGGATCAATTGGTGTCACTGGGCATTATTATAAATCAAGTTTTCAATACAAT TATTTCAAATAGCTCCTTTGATGGTTTTCCTTTACGTTTTCATAAGTATTTTCTTCACTTCCATAGATTTTTCT
CDS sequence (LotjaGi4g1v0439600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCACCATGTCCGCCTGCAAATCAATCACCTCCTCTTCCGTTCCCGTCACAGGTTTATTCGCGGGAAGACGAGG AGTGAAGAGTTCCACCCAATGCAGCTTCTTAGCTGAAACCAACAAGGTCAAATTCCCGAGGCAAGCTGCTCAGTTCAACA AGCAGCACCACCAGACTCGCCGCCACTGCGGCCCTCTCCGCGTGACTTGCGGTGGCGGCAGCGGCGAGAAGATCCTCATT GCTAACAGAGGCGAGATCGCCGTCCGTGTCATTCGTACCGCCCATGAATTGGGGATTCCGTGTGTGGCTGTGTACTCCAC CATTGACAAGGACGCGCTTCATGTCAAGCTGGCTGATGAAGCCGTTTGCATTGGTGAAGCACCCAGTAGCCAATCCTATT TGCTGATCCCGAATGTTCTAGCTGCTGCTATTAGCCGCAAATGCACAATGTTGCATCCCGGTTATGGTTTCCTTGCTGAG AATGCAGTGTTTGTTGAGATGTGTAGGGAACATGGAATCAATTTTATTGGGCCTAATCCTGACAGTATTCGGGTTATGGG TGACAAAGCAACTGCCAGAGAAACAATGAAGAAAGCAAATGTTCCTACTGTTCCAGGAAGTGAGGGGCTTTTACAGAGTA CAGAAGAAGCTATCAGACTTGCACATGAGATTGGTTTCCCTGTGATGATCAAGGCAACAGCTGGTGGTGGAGGACGTGGC ATGCGTCTTGCTAAAGAACCTGAGGAGTTTGTGAAGTTGTTACAGCAAGCTAAGAGTGAGGCAGCTGCTGCATTTGGCAA CGATGGAGTTTATTTGGAGAAGTACATTCAGAACCCAAGGCACATTGAGTTCCAGGTTCTTGCCGATAAATTTGGTAATG TTGTTCACTTTGGTGAGCGTGATTGCAGTATCCAGAGGCGTAATCAGAAACTGCTTGAAGAAGCACCATCTCCTGCATTG ACCCCCGAGTTGCGAAAGGCAATGGGAGACGCAGCAGTTCAAGCTGCTGCATCAATTGGTTACATAGGAGTTGGAACGGT TGAGTTCCTTTTGGATGAAAGGGGTTCATTTTACTTCATGGAGATGAACACACGTATCCAGGTTGAACATCCTGTGACAG AAATGATTTCCTCTACTGATTTGATAGAAGAGCAAATTCGTGTAGCTATGGGTGAAAAACTACGATACAAACAGGAGGAC ATTGTTCTCAGAGGACATTCTATTGAATGCCGTATCAATGCAGAAGATGCTTTTAAGGGGTTTAGACCAGGGCCAGGTAG AATAACAGCATACTTGCCATCTGGAGGTCCATTTGTCAGAATGGATAGCCATGTTTATCCTGATTATGTAGTTCCTCCAA GCTATGACTCCCTTCTTGGAAAGCTGATTGTATGGGCACCAACAAGAGAAAAAGCAATTGAGCGCATGAAACGGGCACTT GATGACACTATCATCACAGGAGTTCCTACAACAATTGATTATCATAAACTTATCCTTGACATTGAGGATTTCAAAAATGG CAAGGTTGATACTGCTTTTATTCCAAAACACGAGGAGGAGTTGGCGGTGCCGCCGCCGCAAAAGAGGGTACTTTCTAACA CGACGAAAGAGCTAAATGGCGCAACTGCCTGA
Protein sequence (LotjaGi4g1v0439600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEATMSACKSITSSSVPVTGLFAGRRGVKSSTQCSFLAETNKVKFPRQAAQFNKQHHQTRRHCGPLRVTCGGGSGEKILI ANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADEAVCIGEAPSSQSYLLIPNVLAAAISRKCTMLHPGYGFLAE NAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKANVPTVPGSEGLLQSTEEAIRLAHEIGFPVMIKATAGGGGRG MRLAKEPEEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKFGNVVHFGERDCSIQRRNQKLLEEAPSPAL TPELRKAMGDAAVQAAASIGYIGVGTVEFLLDERGSFYFMEMNTRIQVEHPVTEMISSTDLIEEQIRVAMGEKLRYKQED IVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHVYPDYVVPPSYDSLLGKLIVWAPTREKAIERMKRAL DDTIITGVPTTIDYHKLILDIEDFKNGKVDTAFIPKHEEELAVPPPQKRVLSNTTKELNGATA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 541 | 539 | 0.0 | – | |
| PANTHER | 3 | 541 | 539 | 0.0 | – | |
| SUPERFAMILY | 57 | 186 | 130 | 1.15E-44 | ||
| Gene3D | 68 | 522 | 455 | 2.7E-191 | – | |
| ProSiteProfiles | 74 | 519 | 446 | 51.925 | ||
| TIGRFAM | 76 | 520 | 445 | 3.7E-246 | ||
| Pfam | 76 | 183 | 108 | 4.1E-40 | ||
| SUPERFAMILY | 156 | 422 | 267 | 1.67E-72 | – | |
| Pfam | 188 | 395 | 208 | 1.8E-82 | ||
| ProSiteProfiles | 193 | 390 | 198 | 50.441 | ||
| ProSitePatterns | 226 | 240 | 15 | - | ||
| ProSitePatterns | 359 | 366 | 8 | - | ||
| SUPERFAMILY | 404 | 521 | 118 | 1.15E-41 | ||
| SMART | 409 | 515 | 107 | 2.0E-59 | ||
| Pfam | 409 | 514 | 106 | 7.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Ligase activity | Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0439600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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