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Lj0g3v0078859.2

Overview

Field Value
Gene ID Lj0g3v0078859
Transcript ID Lj0g3v0078859.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: phosphoribosylaminoimidazole carboxylase, chloroplastic-like [Glycine max] gi|356535191|ref|XP_003536132.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR11609:SF5
61 445 385 0 –
PANTHER
PTHR11609
61 445 385 0 –
PIRSF
PIRSF001340
76 633 558 4.20E-299
IPR016301
Gene3D
G3DSA:3.40.50.20
77 178 102 2.00E-40
IPR016185
SUPERFAMILY
SSF52440
80 175 96 1.02E-27
IPR016185
Hamap
MF_01928
81 442 362 40.852
IPR005875
TIGRFAM
TIGR01161
82 446 365 3.10E-126
IPR005875
SUPERFAMILY
SSF56059
178 378 201 8.84E-62 –
Gene3D
G3DSA:3.30.1490.20
179 230 52 2.20E-07
IPR013815
ProSiteProfiles
PS50975
183 371 189 43.998
IPR011761
Pfam
PF02222
187 358 172 7.40E-57
IPR003135
Gene3D
G3DSA:3.30.470.20
231 455 225 3.80E-80
IPR013816
SUPERFAMILY
SSF51246
384 453 70 2.83E-14
IPR011054
Gene3D
G3DSA:3.40.50.7700
460 623 164 6.50E-75
IPR000031
PANTHER
PTHR11609:SF5
464 629 166 0 –
PANTHER
PTHR11609
464 629 166 0 –
SMART
SM01001
466 615 150 3.10E-97
IPR000031
SUPERFAMILY
SSF52255
467 632 166 1.22E-66
IPR000031
Pfam
PF00731
468 613 146 1.10E-65
IPR000031
TIGRFAM
TIGR01162
468 622 155 3.80E-67
IPR000031
Hamap
MF_01929
468 619 152 33.407
IPR033747

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004638
Molecular function Phosphoribosylaminoimidazole carboxylase activity Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + 2 H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO(2).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006189
Biological process 'de novo' IMP biosynthetic process The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 39

Expression data

Expression pattern

Expression pattern of Lj0g3v0078859.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0078859.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.