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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0211000 |
| Transcript ID | LotjaGi5g1v0211000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formate-dependent phosphoribosylglycinamide formyltransferase; TAIR: AT2G37690.1 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase; Swiss-Prot: sp|P55195|PUR6_VIGAC Phosphoribosylaminoimidazole carboxylase, chloroplastic; TrEMBL-Plants: tr|K7LJS8|K7LJS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:51522479..51529430) extracted from Lotus japonicus Gifu genome v1.2.
AGATTGTATAAGTTTTTAATGATCTCATTTTACATGTTTTTTTAATAAGCGTAATTACTTTAAGAGAGTGTTAAGGACGG GGACGGGGAATAATAGTAACAATTTTTTATTGCTAAATTGTTTTAGATGAAGTACAAGGAAGATGAAATGAAAATAGGTG AACACAGCTAAACCCTAAAGCAGAAGTGAGGGAATCATTGATTTTCCAAAGCTCAAAGCTCAACCACAGACATCAATGGC ATCCAAAAGTTAAAGTTTAAGAATATTTCATTGAGAATTTTTTTAACAAAAAGTAGCTTTTTTTTTTATTTAATTTGTTA TATTTTTTTTCTTTGGAAGAATCCATTTTCAGCTTTCCCTCTAAGAAGACACAACTCTAACCTAAGAGTCTAAGACAAGG TCTTGGTCACACTCTCACTGACTAGGAAGCTGTTGCTGCAAAAACTGAGGTTTGAGCATGCTTCACAGCGCGCGCACGGT GTTGTCAGGGCACACCAGCACTTCACCTTTTGCGTTCAAACCTACCAAGAAAACCTCTTCTTCACTTGGATTCTACATGG AGCAACCACCTCCTCTTTCATCTTCTTTGAAGCTGAAGCAGTGTCGCCACCCCCACCTCACTATTCAAGCATCAAACCAG CATGGTGCAGTCTCCTCAAGGTTAATTTTGCATCTTTAATAATGGGGTTTGTTTAAAACTTGTTTTGACAATAGCCCTTT TCACCCTTTTCAGAATTGAGGCATATGGATGTGAAAATTTATAGTTTTGAGGTTTCTGGAAGTGAAAAGTAATGTTTTTT GAGTTCTGACCGTGATGTTGTTATGTGTTTGTAGCAATGATGAGGTGCCTGTTCATGGACTGTCTGAGACAATTGTTGGT GTTCTGGGAGGAGGTCAACTGGGTCGCATGCTTTGTCAAGCTGCTTCTAAAATGGCAATTAAAGTCATGGTTTTGGATCC GCAGGAGAACTGCCCAGCGAGTTCGCTTTCTTATCATCATATGGTTGGAAGCTTTGATGACAGTGCTACGGTGGAGGAAT TCGCAAAGAGGTTCAAGTTTAAATGGATTATATGTTGATTTGAGTTTGTAATTTCCTATGTCATTTACATTGGGAATAAT GTGTATGTGATGGTTTGATATGGCGTTTAGATGTGGAGTATTGACTGTTGAAATTGAACATGTTGATGTTGATACATTGG AAAAACTTGAGAAGCAAGGAGTTGACTGCCACCCCAAAGCATCTACTATACGGATTATTCAGGTATTATCTCGTCTAGTT TTTTATTTGTAGTTGAGAAAATGAACAACTAGATGTTTTTTTTTGCCTTTGTAGTAGAATATTTTTCATCCATCATAGAC AGGCTAATTTGAATATATTTCAAGATAAGAATTATGCGGTTGCCTGAATGATTTCCCTTCGCTGATATGACTATTCAAAC AGGATAAGTATCAGCAAAAGGTTCACTTCTCTCAGCATGGCATTCCACTTCCTGAATTTAGGCAGGTTTGTACTGTTTAT CTCTTGTAATATAGTATTCGAAAATTGATCTTTAGGACACTAATTTAAGATATGTGAATAATACATTGAACAGATAGATG ATCTTGAAAGTGCTAAAAAAGTAGGGGAACTCTTTGGCTATCCTCTTATGTTAAAGAGTAGGAGGTTGGCTTATGACGGG CGAGGAAATGCTGTTGCTAAAAGTGAAGAGGAACTTCCTTCTGCTGTGGATGGTAATTAGATTTTTAACAGGTGTAGCTT TTTCTTTCTTTGAGAAAGTGAGAACAGGAGAAACTTATCTTTGAGATCATCCTTGTTGTCTTTGATAAGCCCAAAGAAAA AGAAAAACAGCCTTCTGCTCTGGCTAAATGATTTGATATGTGCACCCTTCTTTTTACTTTTTGTTCTTTAACTTTTTGGC CCCAACTTTGCAGCTCTTGGAGGATTTAGTCGTGGTTTATATGCTGAAAAATGGGCACCTTTTGTGAAGGTCAGTATCTA ATTTTTATGTTGACTGCTGCTGCTGATTTTCCAATTCAGTATTTGTATGACGGAAAGTGATATAGCTGATTTTAAGCCAA TAAATCTGTATATTGAGGTCAATGTATTGAGTGAGGAAAAATGATTGTTGCGATTTTTGACTGTGGTTCTCAATAAAATA ACAGTGCCCTCTGTTTTGTCATGTAACCCCTACAGTGTTATATGCAAAGTCTTTTGATTCTCAAAAAGTCTTATATATCT TAAAACTTCCTAAGTTTGTCATGTTGTTTTATGGGTTTATGGATTTTCTTACATTTGTGCTCCTGAAAATGGCAGGAACT AGCCGTCATTGTGGCGAGAGGAAGAGACAATGTGATTTCATGCTATCCTGTTGTTGAAACTATTCACAGGTAATATGCAG AAAACATGCTATTGATATAGAAGATTTTAAATAAATATTTACCGCAGAAAAAATCCATAACCTAGACAATGGTAATTTAA ATAAATCAGCAATCCACCATTTCAGAGTCCTTATATATCTGCTTAAGGGTTTATCTTATGTTATAGGGACAACATATGTC ACATAGTAAAGGCTCCGGCTAATGTGAAATGGAAGATTAGGGAGCGGGCCACTGAAGTTGCTTTCAATGCTGTTAACTCT CTAGAAGGCGCTGGGGTGTTTGCAGTTGAATTGTTCTTGACAGGGGATGGACAGGTTGTGAATTTATTTCTTGATCAACT TTTGACACGTCTCAAATTTTCCCCCTCTTAGAATGCTACATTGACTTCATTGTTGCAAGTAAATTTTCTGCTGCTGCAAA TGGATCATGTTTGTTTGTTTATCGTTGTGACGGTGCCTCGATTTCTTTTCAGATTTTATTAAATGAAGTAGCTCCCAGAC CTCACAATAGTGGGCATCACACTATTGAAGCTTGCTATACCTCACAGTTCGAGCAACATTTGCGGGCTGTTGTTGGTCTT CCTCTTGGCGATCCATCGATGAAAACTCCTGCTGCTATCATGTACAATATATTAGGTGAAGAAGAGGTATATTAGCATTT AATTTTCTCTATTATCCTTTCCTTTGGTCTGATTTTCTCTTGACCTTGATTCCCTTTTGAAGTCATGCTATATTATATTT GTTTGAGATTGATTGTTGTTGTTGTTATTGTTATGATTATTATTATTAGGTGCTTGGTTGAAAAAGAGTGTTGCTAATGA ACCATATATTCTCATATCATCACATAAAATGAAAATGTAAAAAGAGAACAGTAGCTGATTGTCATATTCACGTGAAAAAA AAAATTCCAGCAGGAAATTGAACACTCGCCAGAATTTATGGAAGTTTTCTGCTGTCAGGAACCTAATAAAATCATTGAGT TTTTCCTGGTTTAGTTTTGGTTCATTGTTGGATGATGGCTAATGGCTATGCACTTGAAAGGTTATTAAGTGCCCCCTCTA GTTCATTTGTTACTTGTTTTGAGAAGATGATTCTGTTCACTTAACATTTTTTCAAACTCTTCATTAAACCTGCTTGATGA TTTTAGGGGGAGCTTGGTTTTCGATTAGCGAGTCAATTGATCAAAAGGGCACTGACAATCCCTGGAGCAACTGTTCATTG GTATGATAAACCAGGTGAAGTTCTAGTTAAGCAGCAGTTTTAAGTTGATCAATCCGGAATCTGCTTCATTGTTGCTATTC AATCACTTGTATGACTAGTAAATAACACCATCTTCATTGCAATTTGTCAGAAATGAGAAAGCAACGGAAGATGGGCCATA TAACTATCGTTGGGACTTCACTAGGCAATATTGAAAGCAATCTTGCAACAATAGTGGAACGGAACAAATTTGATGACAAG ACTGCAGGTTAGTGATACAAACTTCTCTTCACTCAAACTTTATCTTTGTAGCTGTTTATCTTATCTTGCTAGTCAATGAA GAAAGATAATTTTCATGGTCAACTGTATTTCTTTATCATTTAATATGCAATAATTTAATAGATAGAATGATAAGTTCACA ACCATATAACCAATTTAGTTTGACTTAAGAACACAATTTTTGTTCACGACTATTGCCTAAGGTTTTTATAGTCACTCATT GGGCAATAACATAAACAATGCATGTAGTACTGTTTCTAAGTTTTGTGCATAAAATAACTACACAAATGGCGTTATTTCTC ATCTATAAATTGCTTTGATTGTCCTTTCTTTATTTTGTTATCGACTCTTCGGCAAATATTCAAACTACAATTCTATTATA AGAAAAATAGAGAAGAGCATTATGTTTGAGAATTTGAAGGTAAAAAATTGATATTCCAGCTCTTAACTATGCTTTCTTTT GTTTGTTAAATGTAGTTGCTCCAAATGTGGGGATCATAATGGGTTCTGATTCAGATCTTCCTGTTATGAAAAGTGCCGCC GAAGTCTTGGAGATGTTTGGTGTGTCTCATGAGGTAAAGTTGATTTAATTTCCCTATGGGAGGGGCCGGGTTATGTATAC AGTTGATTATCATTACCTACACATACATGTATCGAATTTCAGGTTAGAATAGTTTCAGCACACCGAACTCCGGAATTGAT GTTTTCTTATGCCTCGTCTGCTCATGACCGAGGCGTAAAAGTTATTATTGCTGGTGCTGGTGGTGCAGCTCACTTGCCTG GTAAATTACTTTAACTGTGCTTTGTACAATTTTCTTTAAGAGAAACTGTCTATTGAAATTAAGCTTTGAAATCTCAGGTA TGGTTGCTGCTCTTACGCCCTTGCCTGTTATTGGTGTTCCTGTCCGTGCATCTTCACTGGATGGACTTGATTCACTCTTG TCGATTGTCCAGGTATACTTTTCAAATTAAGTTTTTAAGAAATTACCAGTTTTCTGTGCTCTACATAATTGCTGTTTCTG TTTTCTAGGACTTCCTTTCTAAATAATGAGATTATATGTAATATGTTTCTAAAGTTGGCATTATTGCTTCTTTCCGAATT TTGGGCTATTCAAAAGGTTTTTCCATCACTGAGTTTGACAATCTTATGAATGATAATTTTTGTTCAAATGTTGTCTGTAA ATAAAGGATGCCTTTTGTGAAAGTCCAAAAAAATGAACATTAGATGCTTGCTTTTAAAAGAAAACTTGTTATGTTTTAGA AGCAATTTGTCAAAAGCGTAAACAGTTTCTAGTAGCAGTTATTGATGCTTTCAGCTACCACCTGAAGCACTTGAGAATTA ATTCTGACTACCAGTTAACCTTCATATTTGAAGACAGATTTCCAATCACTATACTTGTTAGTTAAATGCTGAAATTCATT CACCGATACTTGTTGCATTCGCCAATTTTTTTTGGGTTAAAGGTGTGTCATGCACAGATTCACATTTCTTTTCACATATC AGTTAAATCTGGTTTCCTTTGGCCCTCTTCAGAATTACCGTTTGTTTTGCCTTTGTTTATCTCATTGCACATTCTTAAAA TTTGGGATAGGCATAACTCTACCCCAAAAGCTAGCTTAGAGATGAGGGTTGCTCTACCCTTTATAAACACTTATTAGGTC ATATCTCTAGTCAATGTGAGACTTCTCAGCACACCCCCTCACGCCCCATGTTGGATAAATGGATCTAGAATACGCTCTAA TACCATCTTATAATTTGGGTTAGGCTCTCTACCTCAATAGTTGGATCTAGGAAATAGGAACTTGCACCACCAGTGACCTT TTTGCAATTATTGAAACTGATACATTACATGTAGTCTGTTCTTAGTTCTTACTAACAAATATCTTGTTGGCTCTGCAGAT GCCAAGAGGTGTCCCTGTTGCCACAGTTGCAATTAATAATGCGACTAATGCTGGATTACTGGCAGTGAGGATGTTGGGTG TTGCCAATGAAAATCTTCTGTCAAGGTTTGCCCCTCCCCCTCTCTTCCTTTCTGCATATCTGTGATGTTAAATTTGTATG TTGAATTCAAGTTCACAAAAGTATAGAAGTGGAGGTAGTATTACCTCTCTTCCACTAATTGGGATGTGACATTTTTGAAT TTTGATACTATGCAGGATGAGCCAATATCAAGAGGATCAAAAGGAAAGCGTCTTAATAAAAGGAGATAAATTAGAAAAAG ATGGTTGGGAATCCTACTTACAGAATACCTAGTTGAATCCATTAAGTGCATGTTTGGAAATCCTTTTACAATTTTTAAAT TCAAAATCAATTTTGAGGGAAAAGATATTTTATGAATAGCTTCTGAGCGCCAGAATTGATTATGTGATAAGAGAAGTTAT CCAAACATGCTATTTAATTTGGTGATTCTTTTAGGTCTTCTCTCATTTTTGGACTGCTACAAAATTTTGATAGACTAGAA GATTTGGTAGAGGGCGTCTAGGCCTGAGTCATCAATAGTAGATTGAGAACCATTGGAGCAACAGCAAGACAATGATCAAA ATATGTTGTTAACCGAATCAGTGTATTTTCTATTTCTAACATAGAGCAGGAGAGGAGAAAAATGTAATCTAGGAGGAAAG CCTTGTATCACATTTGATTTTGATGTGAAAGCAAATAATTATGAGCCAAAGATGGTTGGTTGTTTTTGTATCTTATTTGG TTGCTTGTCAAGGTAGTGCCATGTTGATACATACTTCAGAAAGCGATTGAATTGACTTATCTTCAATGGTGGTGCTAACG GTTGCTTATGCTTTTACTTTGGTTCTGTATGCCATTATTGTCTTGGAGTACTGAGTGGGAGCATTGCGCAAAGCAAAAAG ATGAAAAACATGCAGTATAAATTTCTTATTTATGTAGTCCAAAGGGTTTTGTAGCTGTCGACTAGCATGTGCTGTGTAAG GTATCAGAACCGAGATAAGAACTGAGGTAGAGGGAAGAGGATGAGAAGTAACTGAATTGAGAGAGAATCAGAATTATCAC ATTGAATACAGTTGGGTAAATCTACAGAGTTATTTACACAAAAGATAGAACCTATAAGCTGTTGTAGCTGTT
CDS sequence (LotjaGi5g1v0211000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCACAGCGCGCGCACGGTGTTGTCAGGGCACACCAGCACTTCACCTTTTGCGTTCAAACCTACCAAGAAAACCTC TTCTTCACTTGGATTCTACATGGAGCAACCACCTCCTCTTTCATCTTCTTTGAAGCTGAAGCAGTGTCGCCACCCCCACC TCACTATTCAAGCATCAAACCAGCATGGTGCAGTCTCCTCAAGCAATGATGAGGTGCCTGTTCATGGACTGTCTGAGACA ATTGTTGGTGTTCTGGGAGGAGGTCAACTGGGTCGCATGCTTTGTCAAGCTGCTTCTAAAATGGCAATTAAAGTCATGGT TTTGGATCCGCAGGAGAACTGCCCAGCGAGTTCGCTTTCTTATCATCATATGGTTGGAAGCTTTGATGACAGTGCTACGG TGGAGGAATTCGCAAAGAGATGTGGAGTATTGACTGTTGAAATTGAACATGTTGATGTTGATACATTGGAAAAACTTGAG AAGCAAGGAGTTGACTGCCACCCCAAAGCATCTACTATACGGATTATTCAGGATAAGTATCAGCAAAAGGTTCACTTCTC TCAGCATGGCATTCCACTTCCTGAATTTAGGCAGATAGATGATCTTGAAAGTGCTAAAAAAGTAGGGGAACTCTTTGGCT ATCCTCTTATGTTAAAGAGTAGGAGGTTGGCTTATGACGGGCGAGGAAATGCTGTTGCTAAAAGTGAAGAGGAACTTCCT TCTGCTGTGGATGCTCTTGGAGGATTTAGTCGTGGTTTATATGCTGAAAAATGGGCACCTTTTGTGAAGGAACTAGCCGT CATTGTGGCGAGAGGAAGAGACAATGTGATTTCATGCTATCCTGTTGTTGAAACTATTCACAGGGACAACATATGTCACA TAGTAAAGGCTCCGGCTAATGTGAAATGGAAGATTAGGGAGCGGGCCACTGAAGTTGCTTTCAATGCTGTTAACTCTCTA GAAGGCGCTGGGGTGTTTGCAGTTGAATTGTTCTTGACAGGGGATGGACAGATTTTATTAAATGAAGTAGCTCCCAGACC TCACAATAGTGGGCATCACACTATTGAAGCTTGCTATACCTCACAGTTCGAGCAACATTTGCGGGCTGTTGTTGGTCTTC CTCTTGGCGATCCATCGATGAAAACTCCTGCTGCTATCATGTACAATATATTAGGTGAAGAAGAGGGGGAGCTTGGTTTT CGATTAGCGAGTCAATTGATCAAAAGGGCACTGACAATCCCTGGAGCAACTGTTCATTGGTATGATAAACCAGAAATGAG AAAGCAACGGAAGATGGGCCATATAACTATCGTTGGGACTTCACTAGGCAATATTGAAAGCAATCTTGCAACAATAGTGG AACGGAACAAATTTGATGACAAGACTGCAGTTGCTCCAAATGTGGGGATCATAATGGGTTCTGATTCAGATCTTCCTGTT ATGAAAAGTGCCGCCGAAGTCTTGGAGATGTTTGGTGTGTCTCATGAGGTTAGAATAGTTTCAGCACACCGAACTCCGGA ATTGATGTTTTCTTATGCCTCGTCTGCTCATGACCGAGGCGTAAAAGTTATTATTGCTGGTGCTGGTGGTGCAGCTCACT TGCCTGGTATGGTTGCTGCTCTTACGCCCTTGCCTGTTATTGGTGTTCCTGTCCGTGCATCTTCACTGGATGGACTTGAT TCACTCTTGTCGATTGTCCAGATGCCAAGAGGTGTCCCTGTTGCCACAGTTGCAATTAATAATGCGACTAATGCTGGATT ACTGGCAGTGAGGATGTTGGGTGTTGCCAATGAAAATCTTCTGTCAAGGATGAGCCAATATCAAGAGGATCAAAAGGAAA GCGTCTTAATAAAAGGAGATAAATTAGAAAAAGATGGTTGGGAATCCTACTTACAGAATACCTAG
Protein sequence (LotjaGi5g1v0211000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHSARTVLSGHTSTSPFAFKPTKKTSSSLGFYMEQPPPLSSSLKLKQCRHPHLTIQASNQHGAVSSSNDEVPVHGLSET IVGVLGGGQLGRMLCQAASKMAIKVMVLDPQENCPASSLSYHHMVGSFDDSATVEEFAKRCGVLTVEIEHVDVDTLEKLE KQGVDCHPKASTIRIIQDKYQQKVHFSQHGIPLPEFRQIDDLESAKKVGELFGYPLMLKSRRLAYDGRGNAVAKSEEELP SAVDALGGFSRGLYAEKWAPFVKELAVIVARGRDNVISCYPVVETIHRDNICHIVKAPANVKWKIRERATEVAFNAVNSL EGAGVFAVELFLTGDGQILLNEVAPRPHNSGHHTIEACYTSQFEQHLRAVVGLPLGDPSMKTPAAIMYNILGEEEGELGF RLASQLIKRALTIPGATVHWYDKPEMRKQRKMGHITIVGTSLGNIESNLATIVERNKFDDKTAVAPNVGIIMGSDSDLPV MKSAAEVLEMFGVSHEVRIVSAHRTPELMFSYASSAHDRGVKVIIAGAGGAAHLPGMVAALTPLPVIGVPVRASSLDGLD SLLSIVQMPRGVPVATVAINNATNAGLLAVRMLGVANENLLSRMSQYQEDQKESVLIKGDKLEKDGWESYLQNT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 7 | 22 | 16 | - | – | |
| PANTHER | 75 | 601 | 527 | 2.9E-234 | – | |
| PANTHER | 75 | 601 | 527 | 2.9E-234 | – | |
| PIRSF | 76 | 633 | 558 | 2.1E-302 | ||
| Gene3D | 80 | 187 | 108 | 5.8E-43 | – | |
| SUPERFAMILY | 80 | 175 | 96 | 1.02E-27 | ||
| Hamap | 81 | 442 | 362 | 40.864 | ||
| TIGRFAM | 82 | 446 | 365 | 9.7E-128 | ||
| SUPERFAMILY | 178 | 378 | 201 | 1.77E-61 | – | |
| ProSiteProfiles | 183 | 371 | 189 | 44.514 | ||
| Pfam | 187 | 358 | 172 | 4.1E-57 | ||
| Gene3D | 188 | 257 | 70 | 2.5E-24 | ||
| Gene3D | 258 | 455 | 198 | 1.8E-78 | – | |
| SUPERFAMILY | 384 | 453 | 70 | 7.61E-15 | ||
| Pfam | 385 | 446 | 62 | 2.6E-18 | ||
| Gene3D | 456 | 634 | 179 | 5.5E-78 | ||
| SMART | 466 | 615 | 150 | 3.8E-100 | ||
| SUPERFAMILY | 467 | 632 | 166 | 1.57E-67 | ||
| TIGRFAM | 468 | 622 | 155 | 2.5E-68 | ||
| Pfam | 468 | 613 | 146 | 9.7E-67 | ||
| Hamap | 468 | 619 | 152 | 33.716 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoribosylaminoimidazole carboxylase activity | Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + 2 H(+) = 5-amino-1-(5-phospho-D-ribosyl)imidazole + CO(2). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | 'de novo' IMP biosynthetic process | The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0211000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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