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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011948
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.589s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0104629.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr0 44797780 44799686 +
2 domain predictions
1 GO term
Lj2g3v2748740.2
n.a. CTD small phosphatase-like protein [Medicago truncatula] gi|357492701|ref|XP_003616639.1| chr2 36406759 36411765 -
2 domain predictions
1 GO term
Lj3g3v0797550.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr3 9610104 9615130 -
2 domain predictions
1 GO term
Lj3g3v0797550.2
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502127193|ref|XP_004499597.1| chr3 9610104 9615103 -
2 domain predictions
1 GO term
Lj4g3v2295760.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502086585|ref|XP_004488263.1| chr4 32007610 32012466 -
2 domain predictions
1 GO term
Lj6g3v1093500.1
n.a. PREDICTED: CTD small phosphatase-like protein 2-like isoform X1 [Cicer arietinum] gi|502086585|ref|XP_004488263.1| chr6 13402219 13411640 +
2 domain predictions
1 GO term
Lj6g3v1968100.1
n.a. PREDICTED: probable C-terminal domain small phosphatase-like isoform X1 [Cicer arietinum] gi|502078420|ref|XP_004485939.1| chr6 22798032 22799266 +
2 domain predictions
1 GO term
LotjaGi1g1v0077300.1
n.a. CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 LjG1.1_chr1 11181086 11186776 +
2 domain predictions
1 GO term
LotjaGi1g1v0077300.2
n.a. CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 LjG1.1_chr1 11181518 11186282 +
2 domain predictions
1 GO term
LotjaGi3g1v0101500.1
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A072UU09|A0A072UU09_MEDTR NLI interacting factor-like phosphatase; Found in the gene: LotjaGi3g1v0101500 LjG1.1_chr3 12564384 12569634 +
2 domain predictions
1 GO term
LotjaGi3g1v0101500.2
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A072UU09|A0A072UU09_MEDTR NLI interacting factor-like phosphatase; Found in the gene: LotjaGi3g1v0101500 LjG1.1_chr3 12564465 12569596 +
2 domain predictions
1 GO term
LotjaGi6g1v0075800.1
n.a. CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9GZU7|CTDS1_HUMAN Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; TrEMBL-Plants: tr|I3S2I8|I3S2I8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0075800 LjG1.1_chr6 14315411 14329323 -
2 domain predictions
1 GO term
LotjaGi6g1v0101600.1
n.a. CTD small phosphatase-like protein; TAIR: AT5G11860.1 SCP1-like small phosphatase 5; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A0L9T4D7|A0A0L9T4D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0101600 LjG1.1_chr6 22350519 22355012 +
2 domain predictions
1 GO term
LotjaGi6g1v0211000.1
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A151S1P8|A0A151S1P8_CAJCA CTD small phosphatase-like protein 2; Found in the gene: LotjaGi6g1v0211000 LjG1.1_chr6 50837891 50848538 +
2 domain predictions
1 GO term
LotjaGi6g1v0211000.2
n.a. CTD small phosphatase-like protein; TAIR: AT5G46410.1 SCP1-like small phosphatase 4; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A151S1P8|A0A151S1P8_CAJCA CTD small phosphatase-like protein 2; Found in the gene: LotjaGi6g1v0211000 LjG1.1_chr6 50838019 50851318 +
2 domain predictions
1 GO term
LotjaGi6g1v0317800.1
n.a. CTD small phosphatase-like protein; TAIR: AT5G45700.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q9PTJ6|CTDSL_CHICK CTD small phosphatase-like protein; TrEMBL-Plants: tr|K7M175|K7M175_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0317800 LjG1.1_chr6 63533309 63534587 +
2 domain predictions
1 GO term