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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0077300 |
| Transcript ID | LotjaGi1g1v0077300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11181518..11186282) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCGAGTTGACTCAGGCCGAGGTGTACTCGCCGAGGACTCAGCAAGTGTGGAGGGCACTGTTGAGCTGGTTGGCCTT CTTCTTCCAGATCTTCTTTCAGATTATCAGAGCCCTTGGTCACTACCCTTTGCTCTCGTTCTCTTCTGGTTCTTCTTCAT CGTCGTCTTCAGGTTCCTCTTCCTCTTCTCCTCATGCCTTCAAGCCCCTACCCTCAGTTGAGCTTCAGGAACACGATTCG CCACCACCCTCCGCCCTTGAAATCACCGCCGTCGATCACCACCCTACCCAAAAACTCACGGTATTTATTTCCACAATCAC TCACTGCTTAATTATTTATTGTTATTATGATTGTTGTTGTTGTTGTTTTGTGAAGTGTTTTGAGTGTAGGGATATTGATT GATTTATGCTTGAATGGAACTTCTGGACTTGTTTATTTGATGAAAATTTTGAAGTTTGAGCTATATGTGAAGTAATTAGA ATTGGGAATTTGGAATTCTATGTGTAAGGTGAACTGTTTTGGCTCTGATTTGAGTTGGGTCTGATAGGATTGATGTGATA TTTATATCAAAGGGAACACTGTGGAGAAAACATGGTTTGAGTACCTGGTTTAGTACTGGTGCAACTGCAGGGTGAATAGA GATGCTTGTAGTAGATAAAGATTACTGAGGATGTTACACGAGTGAACCTGGGATCATAGTACATACTAGTTTTTTTTTTG TAAGCAATGCAAAGATTACAGCCTCGGAGGTTAGAGCAACATGGGTAAAATAAACCTCCTCCCCAAGGGAATGCTTTTCA CAAGGAATCGAGCCAGGGACCTCCTTGTGGGTACCCTTGTACACACTTGAGCCTTACGGACGTAGCATGCTTTGACTAGG CCAAACCCCTTTGGGTAGTACATACAAGTGTTCAGCATTAAAATTTGTGTTTTGAGAGAAAGATCATATTCTTTTCCTCT GTTGTACTTCAAACTTAGCCTGTTTCTATGATTGCTTGCTTCATGCAGCTTCCGTGGCTTGTTGTCTTCATATCTTCGCA CTATTTTTCATTTCCTGCTCTCTTGTTTTTGTATTTGATTTTCGTTTAACTGTAAATCTTTGGGTGTTCTGGTTTTGATT TCTTTTGAACGTGCATATTATAAAACTTTCATGGTGTCCTGTTGACTCGTGCAACTTGGAAAATGGTTAACTTCTGTCAT CTTAAGAGGTTTTGGAATCGTCTGAGGTTAAAGTAAATATTTTGCGTGTTTGTGCATTCGTTGGGTTGATGGTGCACGAG TTCCAGTGCTCATTTTTCTGAGAAGCAACAATTAGTTGCTTTTACTTCAACGAGAGTGTGGTGCAGGTGCAAAGGAAAAT CAAACACGCGCTTAGAAGTGGCTCAGAAATGCATTCTCATGTTTGATGATATGTGTTTGGGAACCCCGTTGGTTTCCACG TTGGGGGATAATTGTGAGGGAAGAAGTGATTATGGGAGGTTTAATTGTGAACGCGCTAACATGATTACAGAATCTGGTCC TCTGCATTCGGCGGTGGCCATTTGTATTGTGGAAGCCTGAAGCATTGGTCTTGATAAACCGTATACTGATTTGAGTGATT CCTGTTGCTTATGTCAGAGTTCCATAGAGCTTGTCAGGACATATCCACTTTACTCAAAGCTAAAAACTTGTCACATTTTG GCTTCTTATAATGGAAACAATTACTGTTATTAGATTGCAAATAATTTCACGCTTTATGTTGTTTCCTTTTCTTACTCCCT CCCCACCACAAATCTGGTCCAGTTATATTTCCTGTTTGTAATGTAAATATGTGCATGTGTAGGTAGTGCTTGACTTGGAT GAAACACTGGTATGTGCATATGAGACATCAAGCCTGCCAGCTTCACTACGTGCTCAAGCAATTGAGGGTGGTTTGAATTG GTTTGATCTGGAATGTGTATCTTCAGATAAGGTATGTTCCACTGTAACTTGCATCTAAGTATTTGTTCTGAAGTAGAATA TGTTATATCCTCAGTTGGGCATGTTGGATTTTCAAGGAAGGAGAAGGCAAACCGAAAATCAATTATGTTACTGTCTTTGA ACGCCCTGGGCTGAAGGAATTCTTAAGGAAAGTTGGTGAATTTGCTGACTTGGTACTGTTTACTGCTGGTCTCGAAGGTT CTCCCCAAAATACTAAGCTGCACTCAATTGATATTTATGTTTATGGAATTCTGTTTAATGTTTCTGATTGATATCTGTCT CTAAATTCTCACAGGATATGCTAGACCCCTTGTTGACAGAATAGACATAGAAAATCTGTTCAGTCTACGACTTTACCGGC CTTCGACAATTAGCACGTAAGTGCTTCTACCTCGTTTCCTATCCAGTACTCTGTTTTTATGTAAAATACTGTTATAATCC ATTTAACCTTTCTTTATAGTCATCTTGTTCCTTGATTTTCCCATACCAACCTATGTCTTATCGCTGTTTTCTTTATACGT TGGGGTGGACATCATTGAATCTTGGCAGCACTGATAAAACACTCACAGACAGATATTTGGTACAAACTTGTTGCATTTAT ATAATATGTCTTGACTCTTACATGTGGTCCTGGTTTTGGTCCTTGGATTCATGTGAATGGAGAAATTAATCTCCGAGAAA TCAGTCTCTCGCCTATCTAGTTAGAGGATATTCTGGGAGACAAAATAATAATAACAATAATATGGATTGACTCTATTGGC CTGAATGAGCCTTTGCTAATTTTAACTGCAGCATGCTGCATAATTAAATGGTTGAAAATTTTATGCTGGTATAGAAGAAT CATGCAGCAATGAGTCTCTTTCATTATTTCTAAATGTTGTCATTAAAAGGCCGTTGTTGTTATTGCTGGCTATTTATTTA TACATATATGCATATGATATTACTTCAACATTATAGTGGTGATATACATGTTTGTGATGGTACTTCAGTAAGCAGAGTAC TTACAAGTCTATTTGAATGATACACTATTTGGTCATTTTTTTGTCATGTAGAATGTGGTTTCCTTGAACTTTTTTAAAGG GAAAAACTATTGGATGCCTTTTGTATTATTTTCAAAGTCCTGAGGGTTACATGCTTTGGATTTTCGGGCAGAATGTCTCG ATAATTTTGTTGTTTTTACCCAAGATAGTTAGAGATGAGTCTGGATTATACAGACGCAACTGTTTAGCGGGTTTGTCCAT TCCATGTTTTCAGTTTCGGTGTACTGGTAGTTGTTACCACAACTTGCACTTACGTGCTCTACCCAAATCCCCACCCATCC CAACCTCTTGAGTTATGCTCAGGTGACTTGTGGTTGTGATCCTAGTCACTTGCTTTTATGAGCTATCGCTGCTAAGTAAC TATGACTTTATTGCAATCTCTGAACTTGGATGGAATAAAATAAATTCTATACTCTTGCATTAATCTTAAGGCTAAACTTT TATTATATTCTGCTTGCTCATGCATTTACTTTCTTCTTTTGGGGGTTGGTATAAATTCAACTGCTGAAATCTCGCTAGAA AGGTATAACAACTGCCTATATGTCAATCTGTCAATAACTCTGGAGTGTTGTTATTTAGACAATTTCTTGGATTTCTAGCT TCTGTAACTCAAAATGCATATCTATTTATACTTTTCATTGATGTTACAATTAATTGTTTCCTTTTCACGTTATTCTCACC AAGCGTGGAGTTTCTCTATAGTTTTTATGTCCATGTGTCATTAATAGTTTGAATCCTTTCTGGAATTTTGAAGTTATTTT GTGTTGTAACATCATGATATTATTATGAGATATTGTTTTAATATTGTGATAATATTATGAGATACTTATTTTCTTATTTA TGTGATTTGTACAATTGAAATTAGGAGATTTGTATAAATTTATTCTTTGTAGTTATTTCCTTATTTAGTCTATATAATGT AACCACCTATTGTAATTTCACTAATTTGAGATAAGAAATGAAATTACATTTCTTCTCCTTTCAACTTTTTGTGGTCTAAG TTTTTAAGCTTGAAGTTAATAGTGGAGTCTGTTGGATGAATTTGTGCATACATTCTTATAAATGCTGTATGCTTGCAGAG AATATAGGGAACATGTCAAGGATCTTACCTGCATATCAAAGGATCTATGCCGCATTGTTATTGTAGACAACAATCCCTTC AGCTTTGTATTGCAACCAGTGAATGGAATTCCGTGCATCCCATTTTCTGCTGGGCATCCACATGACACCCAGGTGCTAAT CTGCTGTTGAAAATAAAACACCATGACCCAAATAAAATAAAATCACCCATCTAAGGGCTTGTTTGATTTAGTTTTCTGAA TTTCAAAACTATTTCCAGAAACAATTTCTACATGTTTTTCAAAAGAAGAAAAAAAAATATGAACAAGATGTTTTGCAAAG CTGAAAGATGAGTCACTTGAAAAATGAAAACAGAAACAGAAAAATCTCTGAGATGTTTTGAGATTTCAGTTTTTAAAACT GAAAATAAGATCTGCTTTTAAGATCAGTTTATGTCTGACGTTTTTTTTCTGTTTTAAAAAACTTGAAACTTTTTAATAAA ACCGGAATCAAACATACCCTAATATTCTGATAATTTACTCACCATCTCCTGTATTTTGCATGTTTTTCAGCTTCTAGATG TCATTCTTCCACTTCTGAAGCAACTCTCTGAGCAGAATGATGTAAGGCCTTTGCTCTATGAAAAGTTCCACATGACTGAT TGGTTCCAGAAGCAAGGGATTCCAGCTTCCAGTTGGACATTGTAG
CDS sequence (LotjaGi1g1v0077300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGAGTTGACTCAGGCCGAGGTGTACTCGCCGAGGACTCAGCAAGTGTGGAGGGCACTGTTGAGCTGGTTGGCCTT CTTCTTCCAGATCTTCTTTCAGATTATCAGAGCCCTTGGTCACTACCCTTTGCTCTCGTTCTCTTCTGGTTCTTCTTCAT CGTCGTCTTCAGGTTCCTCTTCCTCTTCTCCTCATGCCTTCAAGCCCCTACCCTCAGTTGAGCTTCAGGAACACGATTCG CCACCACCCTCCGCCCTTGAAATCACCGCCGTCGATCACCACCCTACCCAAAAACTCACGCTTCCGTGGCTTGTTGTAGT GCTTGACTTGGATGAAACACTGGTATGTGCATATGAGACATCAAGCCTGCCAGCTTCACTACGTGCTCAAGCAATTGAGG GTGGTTTGAATTGGTTTGATCTGGAATGTGTATCTTCAGATAAGGAAGGAGAAGGCAAACCGAAAATCAATTATGTTACT GTCTTTGAACGCCCTGGGCTGAAGGAATTCTTAAGGAAAGTTGGTGAATTTGCTGACTTGGTACTGTTTACTGCTGGTCT CGAAGGATATGCTAGACCCCTTGTTGACAGAATAGACATAGAAAATCTGTTCAGTCTACGACTTTACCGGCCTTCGACAA TTAGCACAGAATATAGGGAACATGTCAAGGATCTTACCTGCATATCAAAGGATCTATGCCGCATTGTTATTGTAGACAAC AATCCCTTCAGCTTTGTATTGCAACCAGTGAATGGAATTCCGTGCATCCCATTTTCTGCTGGGCATCCACATGACACCCA GCTTCTAGATGTCATTCTTCCACTTCTGAAGCAACTCTCTGAGCAGAATGATGTAAGGCCTTTGCTCTATGAAAAGTTCC ACATGACTGATTGGTTCCAGAAGCAAGGGATTCCAGCTTCCAGTTGGACATTGTAG
Protein sequence (LotjaGi1g1v0077300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELTQAEVYSPRTQQVWRALLSWLAFFFQIFFQIIRALGHYPLLSFSSGSSSSSSSGSSSSSPHAFKPLPSVELQEHDS PPPSALEITAVDHHPTQKLTLPWLVVVLDLDETLVCAYETSSLPASLRAQAIEGGLNWFDLECVSSDKEGEGKPKINYVT VFERPGLKEFLRKVGEFADLVLFTAGLEGYARPLVDRIDIENLFSLRLYRPSTISTEYREHVKDLTCISKDLCRIVIVDN NPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHMTDWFQKQGIPASSWTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 5 | 310 | 306 | 4.9E-144 | – | |
| PANTHER | 5 | 310 | 306 | 4.9E-144 | – | |
| Phobius | 20 | 39 | 20 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| Phobius | 40 | 311 | 272 | - | – | |
| Gene3D | 91 | 294 | 204 | 1.1E-43 | ||
| CDD | 98 | 255 | 158 | 2.0039E-39 | – | |
| SUPERFAMILY | 98 | 290 | 193 | 2.58E-38 | ||
| ProSiteProfiles | 99 | 279 | 181 | 33.176 | ||
| SMART | 102 | 266 | 165 | 6.6E-46 | ||
| Pfam | 105 | 286 | 182 | 8.0E-38 | ||
| TIGRFAM | 105 | 289 | 185 | 3.0E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatase activity | Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. |
Expression pattern of LotjaGi1g1v0077300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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