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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0077300 |
| Transcript ID | LotjaGi1g1v0077300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CTD small phosphatase-like protein; TAIR: AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|O15194|CTDSL_HUMAN CTD small phosphatase-like protein; TrEMBL-Plants: tr|A0A151R002|A0A151R002_CAJCA Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; Found in the gene: LotjaGi1g1v0077300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11181086..11186776) extracted from Lotus japonicus Gifu genome v1.2.
TTTCACATTTTACAAACCTTAACCAAAGTTGAGTATGGATTTCAAGCTTCCACAACTATTGTTGCGAGATCATGTTAAGT CCCTACAAATGAACACACCGTTTAGAGATCGAAACCATAGACCAAATATTAAGAAGTCGAACTAGTTGTGGTACACCTTA TTCTTATTCATCGATACTTATAGATTTTCCCTTAATTTAAAGGAAGAAAATATAACAAAAGCAGCCGTATAAAAACACGC GCCACCGCAGCGCGTTCAACAATATGTTCTGCCCTCTCTCCCGGCTTTCTCTTTCGTCGAAGCACCACCATCATCATCAT CATCACCACATCTCTCTGAATTCCTCACAGAGACAGAGAACACGAACACGATATACCACAATTCCACACCACTTCCACTT CGTACTACTACGCACCGATTCAGTGGTTTCTGATGGGCGAGTTGACTCAGGCCGAGGTGTACTCGCCGAGGACTCAGCAA GTGTGGAGGGCACTGTTGAGCTGGTTGGCCTTCTTCTTCCAGATCTTCTTTCAGATTATCAGAGCCCTTGGTCACTACCC TTTGCTCTCGTTCTCTTCTGGTTCTTCTTCATCGTCGTCTTCAGGTTCCTCTTCCTCTTCTCCTCATGCCTTCAAGCCCC TACCCTCAGTTGAGCTTCAGGAACACGATTCGCCACCACCCTCCGCCCTTGAAATCACCGCCGTCGATCACCACCCTACC CAAAAACTCACGGTATTTATTTCCACAATCACTCACTGCTTAATTATTTATTGTTATTATGATTGTTGTTGTTGTTGTTT TGTGAAGTGTTTTGAGTGTAGGGATATTGATTGATTTATGCTTGAATGGAACTTCTGGACTTGTTTATTTGATGAAAATT TTGAAGTTTGAGCTATATGTGAAGTAATTAGAATTGGGAATTTGGAATTCTATGTGTAAGGTGAACTGTTTTGGCTCTGA TTTGAGTTGGGTCTGATAGGATTGATGTGATATTTATATCAAAGGGAACACTGTGGAGAAAACATGGTTTGAGTACCTGG TTTAGTACTGGTGCAACTGCAGGGTGAATAGAGATGCTTGTAGTAGATAAAGATTACTGAGGATGTTACACGAGTGAACC TGGGATCATAGTACATACTAGTTTTTTTTTTGTAAGCAATGCAAAGATTACAGCCTCGGAGGTTAGAGCAACATGGGTAA AATAAACCTCCTCCCCAAGGGAATGCTTTTCACAAGGAATCGAGCCAGGGACCTCCTTGTGGGTACCCTTGTACACACTT GAGCCTTACGGACGTAGCATGCTTTGACTAGGCCAAACCCCTTTGGGTAGTACATACAAGTGTTCAGCATTAAAATTTGT GTTTTGAGAGAAAGATCATATTCTTTTCCTCTGTTGTACTTCAAACTTAGCCTGTTTCTATGATTGCTTGCTTCATGCAG CTTCCGTGGCTTGTTGTCTTCATATCTTCGCACTATTTTTCATTTCCTGCTCTCTTGTTTTTGTATTTGATTTTCGTTTA ACTGTAAATCTTTGGGTGTTCTGGTTTTGATTTCTTTTGAACGTGCATATTATAAAACTTTCATGGTGTCCTGTTGACTC GTGCAACTTGGAAAATGGTTAACTTCTGTCATCTTAAGAGGTTTTGGAATCGTCTGAGGTTAAAGTAAATATTTTGCGTG TTTGTGCATTCGTTGGGTTGATGGTGCACGAGTTCCAGTGCTCATTTTTCTGAGAAGCAACAATTAGTTGCTTTTACTTC AACGAGAGTGTGGTGCAGGTGCAAAGGAAAATCAAACACGCGCTTAGAAGTGGCTCAGAAATGCATTCTCATGTTTGATG ATATGTGTTTGGGAACCCCGTTGGTTTCCACGTTGGGGGATAATTGTGAGGGAAGAAGTGATTATGGGAGGTTTAATTGT GAACGCGCTAACATGATTACAGAATCTGGTCCTCTGCATTCGGCGGTGGCCATTTGTATTGTGGAAGCCTGAAGCATTGG TCTTGATAAACCGTATACTGATTTGAGTGATTCCTGTTGCTTATGTCAGAGTTCCATAGAGCTTGTCAGGACATATCCAC TTTACTCAAAGCTAAAAACTTGTCACATTTTGGCTTCTTATAATGGAAACAATTACTGTTATTAGATTGCAAATAATTTC ACGCTTTATGTTGTTTCCTTTTCTTACTCCCTCCCCACCACAAATCTGGTCCAGTTATATTTCCTGTTTGTAATGTAAAT ATGTGCATGTGTAGGTAGTGCTTGACTTGGATGAAACACTGGTATGTGCATATGAGACATCAAGCCTGCCAGCTTCACTA CGTGCTCAAGCAATTGAGGGTGGTTTGAATTGGTTTGATCTGGAATGTGTATCTTCAGATAAGGTATGTTCCACTGTAAC TTGCATCTAAGTATTTGTTCTGAAGTAGAATATGTTATATCCTCAGTTGGGCATGTTGGATTTTCAAGGAAGGAGAAGGC AAACCGAAAATCAATTATGTTACTGTCTTTGAACGCCCTGGGCTGAAGGAATTCTTAAGGAAAGTTGGTGAATTTGCTGA CTTGGTACTGTTTACTGCTGGTCTCGAAGGTTCTCCCCAAAATACTAAGCTGCACTCAATTGATATTTATGTTTATGGAA TTCTGTTTAATGTTTCTGATTGATATCTGTCTCTAAATTCTCACAGGATATGCTAGACCCCTTGTTGACAGAATAGACAT AGAAAATCTGTTCAGTCTACGACTTTACCGGCCTTCGACAATTAGCACGTAAGTGCTTCTACCTCGTTTCCTATCCAGTA CTCTGTTTTTATGTAAAATACTGTTATAATCCATTTAACCTTTCTTTATAGTCATCTTGTTCCTTGATTTTCCCATACCA ACCTATGTCTTATCGCTGTTTTCTTTATACGTTGGGGTGGACATCATTGAATCTTGGCAGCACTGATAAAACACTCACAG ACAGATATTTGGTACAAACTTGTTGCATTTATATAATATGTCTTGACTCTTACATGTGGTCCTGGTTTTGGTCCTTGGAT TCATGTGAATGGAGAAATTAATCTCCGAGAAATCAGTCTCTCGCCTATCTAGTTAGAGGATATTCTGGGAGACAAAATAA TAATAACAATAATATGGATTGACTCTATTGGCCTGAATGAGCCTTTGCTAATTTTAACTGCAGCATGCTGCATAATTAAA TGGTTGAAAATTTTATGCTGGTATAGAAGAATCATGCAGCAATGAGTCTCTTTCATTATTTCTAAATGTTGTCATTAAAA GGCCGTTGTTGTTATTGCTGGCTATTTATTTATACATATATGCATATGATATTACTTCAACATTATAGTGGTGATATACA TGTTTGTGATGGTACTTCAGTAAGCAGAGTACTTACAAGTCTATTTGAATGATACACTATTTGGTCATTTTTTTGTCATG TAGAATGTGGTTTCCTTGAACTTTTTTAAAGGGAAAAACTATTGGATGCCTTTTGTATTATTTTCAAAGTCCTGAGGGTT ACATGCTTTGGATTTTCGGGCAGAATGTCTCGATAATTTTGTTGTTTTTACCCAAGATAGTTAGAGATGAGTCTGGATTA TACAGACGCAACTGTTTAGCGGGTTTGTCCATTCCATGTTTTCAGTTTCGGTGTACTGGTAGTTGTTACCACAACTTGCA CTTACGTGCTCTACCCAAATCCCCACCCATCCCAACCTCTTGAGTTATGCTCAGGTGACTTGTGGTTGTGATCCTAGTCA CTTGCTTTTATGAGCTATCGCTGCTAAGTAACTATGACTTTATTGCAATCTCTGAACTTGGATGGAATAAAATAAATTCT ATACTCTTGCATTAATCTTAAGGCTAAACTTTTATTATATTCTGCTTGCTCATGCATTTACTTTCTTCTTTTGGGGGTTG GTATAAATTCAACTGCTGAAATCTCGCTAGAAAGGTATAACAACTGCCTATATGTCAATCTGTCAATAACTCTGGAGTGT TGTTATTTAGACAATTTCTTGGATTTCTAGCTTCTGTAACTCAAAATGCATATCTATTTATACTTTTCATTGATGTTACA ATTAATTGTTTCCTTTTCACGTTATTCTCACCAAGCGTGGAGTTTCTCTATAGTTTTTATGTCCATGTGTCATTAATAGT TTGAATCCTTTCTGGAATTTTGAAGTTATTTTGTGTTGTAACATCATGATATTATTATGAGATATTGTTTTAATATTGTG ATAATATTATGAGATACTTATTTTCTTATTTATGTGATTTGTACAATTGAAATTAGGAGATTTGTATAAATTTATTCTTT GTAGTTATTTCCTTATTTAGTCTATATAATGTAACCACCTATTGTAATTTCACTAATTTGAGATAAGAAATGAAATTACA TTTCTTCTCCTTTCAACTTTTTGTGGTCTAAGTTTTTAAGCTTGAAGTTAATAGTGGAGTCTGTTGGATGAATTTGTGCA TACATTCTTATAAATGCTGTATGCTTGCAGAGAATATAGGGAACATGTCAAGGATCTTACCTGCATATCAAAGGATCTAT GCCGCATTGTTATTGTAGACAACAATCCCTTCAGCTTTGTATTGCAACCAGTGAATGGAATTCCGTGCATCCCATTTTCT GCTGGGCATCCACATGACACCCAGGTGCTAATCTGCTGTTGAAAATAAAACACCATGACCCAAATAAAATAAAATCACCC ATCTAAGGGCTTGTTTGATTTAGTTTTCTGAATTTCAAAACTATTTCCAGAAACAATTTCTACATGTTTTTCAAAAGAAG AAAAAAAAATATGAACAAGATGTTTTGCAAAGCTGAAAGATGAGTCACTTGAAAAATGAAAACAGAAACAGAAAAATCTC TGAGATGTTTTGAGATTTCAGTTTTTAAAACTGAAAATAAGATCTGCTTTTAAGATCAGTTTATGTCTGACGTTTTTTTT CTGTTTTAAAAAACTTGAAACTTTTTAATAAAACCGGAATCAAACATACCCTAATATTCTGATAATTTACTCACCATCTC CTGTATTTTGCATGTTTTTCAGCTTCTAGATGTCATTCTTCCACTTCTGAAGCAACTCTCTGAGCAGAATGATGTAAGGC CTTTGCTCTATGAAAAGTTCCACATGACTGATTGGTTCCAGAAGCAAGGGATTCCAGCTTCCAGTTGGACATTGTAGAAC TAAAATCGCGTTTGCTAGTATCTCTTTTGTTTATTTTTTGGTGAAACTCTCATAATTATATTGCTAGAAGGGCAGCTGCT GATTGTACGGTTTAGATTCTTTGTATAGCATCCATTTGTTTCTGGAGCATCCAGAGGTTTCAAATGCTGCTTCTTGAAGC CAAGTTAGTTCACCATTTATGTATGTAGATTGCCAGAATTCTTATTGTTGTTTATAGGCTTGCAATCTGTTGGAAAGTAT CTTGATGGTTTATTGTACAATTGTTTATCAATAATTATTAGCAGTTCAAAATTCATTACTTTCCATAGTTGTTTGCAACA GTTGTTAGTTTAATATGCTTTCTCACTTAGTTTTTTCTAGTTTGGATAAAAAATGTGTTAAAGAAATCTTGAAGGGCTCG TAGGTAGAGGTTGTTAGTATGAAACTTTCAAAAGCAGTCTCTGTCATTGGCATAATTATGTATGACATGTTTGAATATTT GTAAGTTCAAA
CDS sequence (LotjaGi1g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGAGTTGACTCAGGCCGAGGTGTACTCGCCGAGGACTCAGCAAGTGTGGAGGGCACTGTTGAGCTGGTTGGCCTT CTTCTTCCAGATCTTCTTTCAGATTATCAGAGCCCTTGGTCACTACCCTTTGCTCTCGTTCTCTTCTGGTTCTTCTTCAT CGTCGTCTTCAGGTTCCTCTTCCTCTTCTCCTCATGCCTTCAAGCCCCTACCCTCAGTTGAGCTTCAGGAACACGATTCG CCACCACCCTCCGCCCTTGAAATCACCGCCGTCGATCACCACCCTACCCAAAAACTCACGGTAGTGCTTGACTTGGATGA AACACTGGTATGTGCATATGAGACATCAAGCCTGCCAGCTTCACTACGTGCTCAAGCAATTGAGGGTGGTTTGAATTGGT TTGATCTGGAATGTGTATCTTCAGATAAGGAAGGAGAAGGCAAACCGAAAATCAATTATGTTACTGTCTTTGAACGCCCT GGGCTGAAGGAATTCTTAAGGAAAGTTGGTGAATTTGCTGACTTGGTACTGTTTACTGCTGGTCTCGAAGGATATGCTAG ACCCCTTGTTGACAGAATAGACATAGAAAATCTGTTCAGTCTACGACTTTACCGGCCTTCGACAATTAGCACAGAATATA GGGAACATGTCAAGGATCTTACCTGCATATCAAAGGATCTATGCCGCATTGTTATTGTAGACAACAATCCCTTCAGCTTT GTATTGCAACCAGTGAATGGAATTCCGTGCATCCCATTTTCTGCTGGGCATCCACATGACACCCAGCTTCTAGATGTCAT TCTTCCACTTCTGAAGCAACTCTCTGAGCAGAATGATGTAAGGCCTTTGCTCTATGAAAAGTTCCACATGACTGATTGGT TCCAGAAGCAAGGGATTCCAGCTTCCAGTTGGACATTGTAG
Protein sequence (LotjaGi1g1v0077300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELTQAEVYSPRTQQVWRALLSWLAFFFQIFFQIIRALGHYPLLSFSSGSSSSSSSGSSSSSPHAFKPLPSVELQEHDS PPPSALEITAVDHHPTQKLTVVLDLDETLVCAYETSSLPASLRAQAIEGGLNWFDLECVSSDKEGEGKPKINYVTVFERP GLKEFLRKVGEFADLVLFTAGLEGYARPLVDRIDIENLFSLRLYRPSTISTEYREHVKDLTCISKDLCRIVIVDNNPFSF VLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHMTDWFQKQGIPASSWTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 5 | 305 | 301 | 2.1E-146 | – | |
| PANTHER | 5 | 305 | 301 | 2.1E-146 | – | |
| Phobius | 20 | 39 | 20 | - | – | |
| TMHMM | 21 | 40 | 20 | - | – | |
| Phobius | 40 | 306 | 267 | - | – | |
| Gene3D | 85 | 289 | 205 | 2.7E-45 | ||
| SUPERFAMILY | 90 | 285 | 196 | 7.77E-40 | ||
| ProSiteProfiles | 94 | 274 | 181 | 34.906 | ||
| SMART | 97 | 261 | 165 | 1.2E-48 | ||
| CDD | 98 | 250 | 153 | 5.39983E-41 | – | |
| TIGRFAM | 98 | 284 | 187 | 5.4E-51 | ||
| Pfam | 99 | 281 | 183 | 3.1E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphatase activity | Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. |
Expression pattern of LotjaGi1g1v0077300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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