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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013041
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.058s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0074089.1
n.a. PREDICTED: AP-2 complex subunit alpha-2-like [Glycine max] gi|356543534|ref|XP_003540215.1| chr0 27865621 27869573 +
2 domain predictions
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Lj2g3v1378900.1
n.a. PREDICTED: AP-1 complex subunit gamma-2-like isoform X1 [Cicer arietinum] gi|502093017|ref|XP_004489861.1| chr2 21792748 21806224 -
2 domain predictions
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Lj3g3v3579360.2
n.a. PREDICTED: beta-adaptin-like protein B-like [Cicer arietinum] gi|502144336|ref|XP_004505660.1| chr3 43470951 43478699 +
2 domain predictions
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LotjaGi1g1v0570700.1
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A151TG92|A0A151TG92_CAJCA Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429473 110441676 +
2 domain predictions
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LotjaGi1g1v0570700.2
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429820 110435990 +
2 domain predictions
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LotjaGi1g1v0570700.3
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 LjG1.1_chr1 110429980 110435990 +
2 domain predictions
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LotjaGi2g1v0318400.1
n.a. AP-1 complex subunit gamma-2; TAIR: AT1G60070.1 Adaptor protein complex AP-1, gamma subunit; Swiss-Prot: sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2; TrEMBL-Plants: tr|V7CJD1|V7CJD1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0318400 LjG1.1_chr2 79327778 79341806 -
2 domain predictions
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LotjaGi2g1v0318400.2
n.a. AP-1 complex subunit gamma-2; TAIR: AT1G60070.1 Adaptor protein complex AP-1, gamma subunit; Swiss-Prot: sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2; TrEMBL-Plants: tr|V7CJD1|V7CJD1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0318400 LjG1.1_chr2 79328753 79340622 -
2 domain predictions
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LotjaGi3g1v0172200.1
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23691479 23711881 +
2 domain predictions
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LotjaGi3g1v0172200.2
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23691898 23710822 +
2 domain predictions
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LotjaGi3g1v0172200.3
n.a. AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 LjG1.1_chr3 23696749 23710822 +
2 domain predictions
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LotjaGi3g1v0507600.1
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|I1LQ46|I1LQ46_SOYBN Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464004 92471542 +
2 domain predictions
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LotjaGi3g1v0507600.2
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464522 92471127 +
2 domain predictions
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LotjaGi3g1v0507600.3
n.a. Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 LjG1.1_chr3 92464653 92471127 +
2 domain predictions
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LotjaGi3g1v0534900.1
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95173930 95182044 +
2 domain predictions
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LotjaGi3g1v0534900.2
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95174166 95181677 +
2 domain predictions
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LotjaGi3g1v0534900.3
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95174166 95181677 +
2 domain predictions
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LotjaGi3g1v0534900.4
n.a. Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|A0A151SCZ4|A0A151SCZ4_CAJCA AP-1 complex subunit beta-1; Found in the gene: LotjaGi3g1v0534900 LjG1.1_chr3 95175667 95181677 +
2 domain predictions
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