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IPR013041

Description

IPR013041 is a Clathrin adaptor, appendage, Ig-like subdomain superfamily.

<p>Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer [[cite:PUB00035769]].</p> <p>This superfamily represents a β-sandwich structural motif found in the appendage (ear) domain of alpha-, beta-and gamma-adaptin from AP clathrin adaptor complexes, the GAE (gamma-adaptin ear) domain of GGA adaptor proteins, and the appendage domain of the gamma subunit of coatomer complexes. These domains have an immunoglobulin-like β-sandwich fold containing 7 or 8 strands in 2 β-sheets in a Greek key topology [[cite:PUB00011810], [cite:PUB00027621], [cite:PUB00030054]]. Although the appendage domains from AP / GGA adaptins and coatomers share a similar fold, there is little sequence identity between them. However, they also share similar motif-based cargo recognition and accessory factor recruitment mechanisms.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 18

Transcript Name Description Predicted domains Domain count
PREDICTED: AP-2 complex subunit alpha-2-like [Glycine max] gi|356543534|ref|XP_003540215.1| 12
PREDICTED: AP-1 complex subunit gamma-2-like isoform X1 [Cicer arietinum] gi|502093017|ref|XP_004489861.1| 19
PREDICTED: beta-adaptin-like protein B-like [Cicer arietinum] gi|502144336|ref|XP_004505660.1| 26
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A151TG92|A0A151TG92_CAJCA Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 23
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 23
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 23
AP-1 complex subunit gamma-2; TAIR: AT1G60070.1 Adaptor protein complex AP-1, gamma subunit; Swiss-Prot: sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2; TrEMBL-Plants: tr|V7CJD1|V7CJD1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0318400 19
AP-1 complex subunit gamma-2; TAIR: AT1G60070.1 Adaptor protein complex AP-1, gamma subunit; Swiss-Prot: sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2; TrEMBL-Plants: tr|V7CJD1|V7CJD1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0318400 19
AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 23
AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 23
AP-2 complex subunit alpha; TAIR: AT5G22770.1 alpha-adaptin; Swiss-Prot: sp|Q8LPL6|AP2A1_ARATH AP-2 complex subunit alpha-1; TrEMBL-Plants: tr|A0A151RV94|A0A151RV94_CAJCA AP-2 complex subunit alpha; Found in the gene: LotjaGi3g1v0172200 23
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|I1LQ46|I1LQ46_SOYBN Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 23
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 23
Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2R0D6|A0A0B2R0D6_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi3g1v0507600 23
Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 26
Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 24
Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|I1LPD3|I1LPD3_SOYBN Beta-adaptin-like protein; Found in the gene: LotjaGi3g1v0534900 24
Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|A0A151SCZ4|A0A151SCZ4_CAJCA AP-1 complex subunit beta-1; Found in the gene: LotjaGi3g1v0534900 24

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.56