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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0534900 |
| Transcript ID | LotjaGi3g1v0534900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-adaptin-like protein; TAIR: AT4G23460.1 Adaptin family protein; Swiss-Prot: sp|O81742|APBLC_ARATH Beta-adaptin-like protein C; TrEMBL-Plants: tr|A0A151SCZ4|A0A151SCZ4_CAJCA AP-1 complex subunit beta-1; Found in the gene: LotjaGi3g1v0534900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95175667..95181677) extracted from Lotus japonicus Gifu genome v1.2.
CAGGATTCACAAGATCCAAATCCTTTGATTCGTGCCTTAGCTGTGCGGACAATGGGCTGCATTCGTGTGGATAAAATTAC TGAGTATCTATGTGATCCCCTTCAAAGATGTCTGAAGGTACTTATTCAGTTTTGTTATAATTTGCATGTGTCTATTTTTA AGTTTGAAAAGTTCACTTTTTTTTTTGTTATTTTGCTGATTACAATGATATGTTGACTTTTTGGGCCACATACTTGTAAC CCTTACTTATGTTTGATATGTTGACAGGATGATGATCCATATGTTCGCAAGACAGCGGCGATTTGTGTTGCTAAGCTTTA TGACATAAATGCAGAGCTAGTTGAGGACAGGGGTTTTTTGGAATCTCTGAAGGATTTGATTTCTGATAATAATCCTATGG TTGTCGCAAATGCGGTTGCAGCCCTTGCAGAAATTCAAGACAATAGTAGTAGACCCATCTTTGAGATCACGAGTCACACA CTTTCCAAACTCCTCACTGCTTTAAATGAATGTACAGAGTAAGTTGGCATTTTATGTTTTTGTTATCATTATCACCAAGC TATTTTGCCTAGTTGATTCACTTGATTTTGCAGTTATTAGACACTGTTTCAGTTGTTATCAACCTGTCTTTTCCGTGTCC ATCTTTTATCACATTGTTTTATTCAATCTAACCCAACTTACTTTTAATTCATCACCAGATGGGGTCAAGTTTTTATCCTG GATGCTCTTTCCAGATACAAGGCAGCTGATGCTCGTGAGGCAGAAAACATAGTAGAAAGAGTTACCCCACGTTTACAACA TGCCAATTGTGCAGTTGTACTATCAGCTGTCAAGGTGATTCCCCCCCTCCCCACAAATAACGTGTTATCTTGCAATTATC ATGTTTGTTAGAAATATAGTATAAAACCATTCATGTGTCATTTACCCAATAGCTTATAGCTTTTGGGGTAATTGGTTCAT GTCATGGTATCATGCCTCTATGACCAAGTGGTCTAATGTTCGATCATTGTTCCCCCCATTATCCTAATAAAAGTTGAATT TTAGCTCATGGCAGGTGAGCTAGTGCATTGCCCATGCTTCAAGCCTAATGGGCTCTTGCGTGAGGGGGTGTGTTAGAAAT ATTATATAAAACCATTCATGTTTTCTTTACCCAATAGTTCCTCTTTTTGGATAATTGATTCATGACATAGCTTATATTTA TGCATAGCTTAATTGCTCTCAAGCTGATGCTTCAGATTTCACATTTGGCATGGTTTGCTAACCATAATTTTCATGACATG TAGATGATCCTTCAACAAATGGAGCTTATCACCAGTACTGACGTGGTCCGGAATCTTTGCAAAAAGATGGCTCCTCCCCT TGTGACATTACTCTCAGCAGAACCTGAGATACAATATGTTGCACTGCGGAATATCAATCTCATAGTACAAAGAAGACCAA CAATTCTTGCACATGAAATTAAGGTAATGGTCTAAGTTTTAGTTTATTTGTAACCAAGTTATTAAAATATAATACACACT AGGGAACTTATGGAAAATCATCTACTGGAGGATGGGGTGGTTACGGAGCTCTTTTTCTACATGTAGGTGTTCTTCTGCAA GTACAATGATCCCATCTATGTGAAAATGGAAAAGTTAGAAATTATGATAAAACTCGCTTCAGACAGAAATATAGACCAGG TATGCTTTACATTGTACTGCTTTCAGTTCATATTTCTCCCATTCTTCACATTTTTTCATTTGTTTCAAGTGAATTCTGTA GTGATTATAGTGAACACTACACTATGTGTCTGACCAAAGATGTGTTAATCATTCATCCTGCCCCTTGGATAAGAATCATT CTTTCACCATTCATTTTCTAATTTTACTTACTTATTTTGGAGGACACTATATCCTGTACTTTATTTCTCCTCTCTAATGA AATTTCTTCTTCTATCAAAGAACAAGCTATCCTGTTACATTGATGAGACTCACATTTCTGTCATTGTTTTGATGCAGAAA TGCATCTTTTCCATTTGAATAGCCATTTAATTTCATAAAACATGTTTGCTTTTAAATCTCATTGCAGCTTCACTATATTT GGTATATAATCATGGGTCAGTTTTTTATTTTTGCTGACATACCGGTTATGATATTGACAGGTTTTATTGGAATTTAAAGA ATATGCTACTGAAGTTGATGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGGTCGTTGTGCCATCAAATTAGAGAGAG CGGCTGAAAGATGCATCAGTGTTTTGCTTGAGTTGATCAAGATAAAAGTAAATTATGTGGTTCAGGAGGCAATCATTGTT ATCAAAGATATATTTAGAAGATACCCTAACACGTAAGATTATCTTTTCTTATGCTCTTTTTTCCTTAGGGGGAGGCGATA GAAGGTAGTGAAGTTAGCAATTAGTATTATATTTTAAACTTATTTGAACATTTGTTCCATTTGGCAGATATGAGTCCATA ATTGCAACACTTTGTGAGAGCTTAGACAGCTTGGATGAGCCTGAAGCCAAGGTATCAATTTCTCTGAGTGCCTCTGTAAT TGTCATTTTGCATTAGCATGCATGCTTATTATCTTATCGTCCCCTTTCTTATGTGGATAGGCATCAATGATCTGGATAAT TGGTGAATATGCGGAAAGAATCGACAATGCTGATGAGCTTCTTGAAAGTTTCTTGGAAAGTTTCCCTGAAGAACCTGCAC AAGTCCAACTACAATTGCTGACAGCTACTGTTAAACTTTTCCTTAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAG GTCCTTATGCATGTTTTGTTCATAATTGTGGTGATTTGTTTTCTTGTTTTTCATTCCAAATGCCAAATGGATATTTTTGG TACTATTTCGGTTGTATTCATCTTCCCTGAATTTCCTCATACTCTCGCATGTGATTTATAGATAGGGTTAACTTGTGAGA TTTACCAATTTGATAGGACTGGTACCAAGAAAGTGACAGAAGTGAAGAAATGTTTGTATTATTGATGAAGAACACTAATT TTCTAACCTGTCCAATAAGACAGGATTTAGGAAAGTATAGCAAAGAGATACAATGGTGTTGTTGAGACTTTCGAGGGGCT CAACTCTCTCCTCTAATGTCCAATTACAATCTGCATACCCCCTATCAGCACTACTGCCCCCTATTTATATTACTAACAAC TAACTACCCGCCCTTGTAAGTTGTAACTACTAACTAACTTTATTTGGTTACTGAGTTAGTTGTTCAATGAAAATGACTGC AATGGATTACAGTGTTATCAAATATCTGCCATGGCGCCGCCATGCAGTTTCTCATGGTGGTTTTTTGGCTTTCCGCCATG GCTGATATCCCGCCATTATTTGTCATGTATGGCGGGGTTTTAGCTTTCCGCCATGACCCGCCATCCGCAATTAATAACAC TGATGGATTAGGTCCCCTAGATCTCCCCTACACCTCTTTGCATAGACCTTCTTAATTAGGGGTTTATTACTGTCATCTCC AGGTGGTCTATATAAGCAACTTATCATTTTTCATATTGGTTGTTATACATGTTAGATCATTGCTTGCATTCTATGTTTTA GAAACTTGGTTGTTTCACCACTACCTTAGTCTGAACACTTGCACGTTATATTCTGTGGTGCATTTTTTTCTCCAAAATAA AAAATGAATGCTCGCATTTTTTTAAGTACGCCTTTGAGCCTATATCTTGAACAATTTCTAAAGTTGTTGGAACGAAGTCT GGAAGACAATTTTGCCATTCTATCCTTTGTCAAAGTTTGTTATACGAGTCTTCTTTATAGTTTCTAAAAATTTAAGCAGC TGTTTCATCTACATTCTTCAGATCCTGCTATGCTAAGTTTCACATTATAGCTTAATGGTTACAGGTTGTTCTGAACAATG CCACTGTGGAGACAGATAATCCTGATTTGCGAGATCGTGCATACATATATTGGCGTCTCCTCTCAACTGACCCTGAGGTT TGATTTCATTCTCGAATTGGAAATCAGTCTTTTTGATCTGCATTAATGTCAACATGTGGTCAATTAGTTGTGGTGCACCG TGCATATCCAACTGAGTTTGGATATTCAAATTGAACTTATCAACTGCTTACTCTTTACAGAGGAGTTCTTAATTTATTTT ATCATTATGGGAAAACTATTAGGTATATCTTAGCACACTGCTATGATTGGCAATTAATTACTGCTTAGTGTCCAACCACA GGCAAATTATTGGGTTTTCCTCTCCCATATTTTTACATTTTTTAATAAATTCTTTTCTCGACACAAATTTTGAGATCTAA ATTTGATGTGCCTAGCTTGTCTGTCCCAGGCAGCTAAGGACGTTGTGTTAGCTGAGAAGCCTGTGATAACTGATGACTCA AATCTACTTGATCCTTCTCTCCTTGACGAGCTTCTTGTCAATATTGCTACATTATCTTCTGTATATCACAAGCCCCCGGA TGCATTTGTAACCCGCACGCACTCATCGGCCCAGAAAACTGAAGAAGATGACTATCCTGAGGGAAGTGAATCAGGATATT CTGAGTCATCTGCAAATCCTGCCAATGGTGCTGCATCACCACCTACTTCCAGCTATACAGTACCTGCATCTGTTGCACCA GCGTCACCTCCACCTGCTGCACCTGTGCCAGATTTACTTGGTGATTTGATGGGCATGGATAATAGTTCTATTGTACCTGT TGATCAGCCAGCTACTCCTACTGGGTGAGTGAAACTCAAAAGTAACAGTGTGGCTTATATGAAATTGTTTACTGTTATAA GCTATGCATTTTAGTAGTATTGTGTTTAATTTATTATCTGATAAAAGGATAAGTTATACACAAATAGGGATTTAGAATAA TTTAGCGATGCTTTATCTATTATTAATATTGAAAGATGTTTACATGAGTTTGGGAAGACCTATCAGCATATGCAATGTCT GAAACCTTATATGAAAACATTACTAATTAGATCTGCGCGCTTATTGCAGGCCTCCTTTGCCTGTCGTACTTCCTGCTTCA ACTGGTCAGGGTTTACAAATCAGTGCACAGCTAACTAGGAGGGATGGTCAAGTATTTTACAGTATGTTGTTTGAGAACAA CACTCAAGTTCCACTTGATGGCTTCATGATTCAATTTAACAAGAACACATTTGGTCTTGCGGCTGCTGGACCACTACAGG TTTTTATTGCATACATTGTTTTTACTTGGGGATTTCTTATTTCTATCAAAATAAGCTCTAATAAGATGGTTCACCTTTCA GGTTCCTCAATTGCAACCTGGAACTTCAACTAGGACTCTCCTTCCAATGGTTGTGTTCCAGAACATGTCCCAAGGTCCTC CTAGCACACTTTTGCAGGTTGCTATAAAAAACAATCAACAGCCCGTGTGGTATTATAACGACAAAATCTTATTCCATGTA CTTTTTACTGAGGATGGTAGAATGGAACGTTCCGCTTTCCTGGAGGTACATCTTTTCATTCCTTTGATCCATTTTCACTA CAATAGGTTCTCACTTGACAATTTATGCCATACCTTGATTCTTTCATGCGTAAACTTTCCAATTTTTTGTTACTGGGATT GTTCTAATATATGTTATTCAGTCATGTTTTTGTTTTTGCCACTTTTCATGTTTTTGCCACTTTTCATGATTAATACTTGA AATTGAAACCTGCTCATTAACTTTGTTGCAGACGTGGAGGTCCCTTCCTGATTCAAATGAGGTTTCCAAGGACTTCCCAG TCATTGTGATTAGTGGTGTGGATCCAACAGTGGAACGACTGGCCGCATCAAACGTGTTCTTCATTGCAAAGCGCAAGAAT GCGAACCAGGATGTGTTTTACTTCTCAGCTAAAATGCCTCGAGGGATACCATTATTAATTGAACTTACCACAGTTGTTGG AAGCCCTGGCGTCAAATCTGCAATCAAGACACCAAGCCCTGAAATGTCACCATTTATCTTTGAAGCCATCGAGACTCTTC TCAGGAGTTAA
CDS sequence (LotjaGi3g1v0534900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTGCATTCGTGTGGATAAAATTACTGAGTATCTATGTGATCCCCTTCAAAGATGTCTGAAGGATGATGATCCATA TGTTCGCAAGACAGCGGCGATTTGTGTTGCTAAGCTTTATGACATAAATGCAGAGCTAGTTGAGGACAGGGGTTTTTTGG AATCTCTGAAGGATTTGATTTCTGATAATAATCCTATGGTTGTCGCAAATGCGGTTGCAGCCCTTGCAGAAATTCAAGAC AATAGTAGTAGACCCATCTTTGAGATCACGAGTCACACACTTTCCAAACTCCTCACTGCTTTAAATGAATGTACAGAATG GGGTCAAGTTTTTATCCTGGATGCTCTTTCCAGATACAAGGCAGCTGATGCTCGTGAGGCAGAAAACATAGTAGAAAGAG TTACCCCACGTTTACAACATGCCAATTGTGCAGTTGTACTATCAGCTGTCAAGATGATCCTTCAACAAATGGAGCTTATC ACCAGTACTGACGTGGTCCGGAATCTTTGCAAAAAGATGGCTCCTCCCCTTGTGACATTACTCTCAGCAGAACCTGAGAT ACAATATGTTGCACTGCGGAATATCAATCTCATAGTACAAAGAAGACCAACAATTCTTGCACATGAAATTAAGGTGTTCT TCTGCAAGTACAATGATCCCATCTATGTGAAAATGGAAAAGTTAGAAATTATGATAAAACTCGCTTCAGACAGAAATATA GACCAGGTTTTATTGGAATTTAAAGAATATGCTACTGAAGTTGATGTAGATTTTGTTAGAAAGGCTGTTCGTGCAATTGG TCGTTGTGCCATCAAATTAGAGAGAGCGGCTGAAAGATGCATCAGTGTTTTGCTTGAGTTGATCAAGATAAAAGTAAATT ATGTGGTTCAGGAGGCAATCATTGTTATCAAAGATATATTTAGAAGATACCCTAACACATATGAGTCCATAATTGCAACA CTTTGTGAGAGCTTAGACAGCTTGGATGAGCCTGAAGCCAAGGCATCAATGATCTGGATAATTGGTGAATATGCGGAAAG AATCGACAATGCTGATGAGCTTCTTGAAAGTTTCTTGGAAAGTTTCCCTGAAGAACCTGCACAAGTCCAACTACAATTGC TGACAGCTACTGTTAAACTTTTCCTTAAGAAGCCAACTGAGGGACCACAGCAGATGATTCAGGTTGTTCTGAACAATGCC ACTGTGGAGACAGATAATCCTGATTTGCGAGATCGTGCATACATATATTGGCGTCTCCTCTCAACTGACCCTGAGGCAGC TAAGGACGTTGTGTTAGCTGAGAAGCCTGTGATAACTGATGACTCAAATCTACTTGATCCTTCTCTCCTTGACGAGCTTC TTGTCAATATTGCTACATTATCTTCTGTATATCACAAGCCCCCGGATGCATTTGTAACCCGCACGCACTCATCGGCCCAG AAAACTGAAGAAGATGACTATCCTGAGGGAAGTGAATCAGGATATTCTGAGTCATCTGCAAATCCTGCCAATGGTGCTGC ATCACCACCTACTTCCAGCTATACAGTACCTGCATCTGTTGCACCAGCGTCACCTCCACCTGCTGCACCTGTGCCAGATT TACTTGGTGATTTGATGGGCATGGATAATAGTTCTATTGTACCTGTTGATCAGCCAGCTACTCCTACTGGGCCTCCTTTG CCTGTCGTACTTCCTGCTTCAACTGGTCAGGGTTTACAAATCAGTGCACAGCTAACTAGGAGGGATGGTCAAGTATTTTA CAGTATGTTGTTTGAGAACAACACTCAAGTTCCACTTGATGGCTTCATGATTCAATTTAACAAGAACACATTTGGTCTTG CGGCTGCTGGACCACTACAGGTTCCTCAATTGCAACCTGGAACTTCAACTAGGACTCTCCTTCCAATGGTTGTGTTCCAG AACATGTCCCAAGGTCCTCCTAGCACACTTTTGCAGGTTGCTATAAAAAACAATCAACAGCCCGTGTGGTATTATAACGA CAAAATCTTATTCCATGTACTTTTTACTGAGGATGGTAGAATGGAACGTTCCGCTTTCCTGGAGACGTGGAGGTCCCTTC CTGATTCAAATGAGGTTTCCAAGGACTTCCCAGTCATTGTGATTAGTGGTGTGGATCCAACAGTGGAACGACTGGCCGCA TCAAACGTGTTCTTCATTGCAAAGCGCAAGAATGCGAACCAGGATGTGTTTTACTTCTCAGCTAAAATGCCTCGAGGGAT ACCATTATTAATTGAACTTACCACAGTTGTTGGAAGCCCTGGCGTCAAATCTGCAATCAAGACACCAAGCCCTGAAATGT CACCATTTATCTTTGAAGCCATCGAGACTCTTCTCAGGAGTTAA
Protein sequence (LotjaGi3g1v0534900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIQD NSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI TSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNI DQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIAT LCESLDSLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNA TVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNLLDPSLLDELLVNIATLSSVYHKPPDAFVTRTHSSAQ KTEEDDYPEGSESGYSESSANPANGAASPPTSSYTVPASVAPASPPPAAPVPDLLGDLMGMDNSSIVPVDQPATPTGPPL PVVLPASTGQGLQISAQLTRRDGQVFYSMLFENNTQVPLDGFMIQFNKNTFGLAAAGPLQVPQLQPGTSTRTLLPMVVFQ NMSQGPPSTLLQVAIKNNQQPVWYYNDKILFHVLFTEDGRMERSAFLETWRSLPDSNEVSKDFPVIVISGVDPTVERLAA SNVFFIAKRKNANQDVFYFSAKMPRGIPLLIELTTVVGSPGVKSAIKTPSPEMSPFIFEAIETLLRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 785 | 785 | 0.0 | – | |
| SUPERFAMILY | 1 | 470 | 470 | 1.25E-98 | ||
| Gene3D | 1 | 481 | 481 | 1.2E-197 | ||
| Pfam | 1 | 422 | 422 | 1.7E-121 | ||
| PANTHER | 1 | 785 | 785 | 0.0 | ||
| MobiDBLite | 474 | 546 | 73 | - | – | |
| MobiDBLite | 492 | 519 | 28 | - | – | |
| SUPERFAMILY | 556 | 671 | 116 | 2.01E-34 | ||
| Gene3D | 556 | 669 | 114 | 2.3E-35 | ||
| SMART | 556 | 666 | 111 | 2.5E-7 | ||
| Pfam | 564 | 659 | 96 | 5.1E-9 | ||
| Gene3D | 671 | 787 | 117 | 1.1E-33 | ||
| SUPERFAMILY | 674 | 786 | 113 | 1.65E-31 | ||
| SMART | 675 | 786 | 112 | 1.1E-32 | ||
| Pfam | 676 | 785 | 110 | 1.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. | ||
| Cellular component | Clathrin adaptor complex | A membrane coat adaptor complex that links clathrin to a membrane. |
Expression pattern of LotjaGi3g1v0534900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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