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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0570700 |
| Transcript ID | LotjaGi1g1v0570700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coatomer subunit gamma; TAIR: AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP; Swiss-Prot: sp|Q0WW26|COPG_ARATH Coatomer subunit gamma; TrEMBL-Plants: tr|A0A0B2S4Z9|A0A0B2S4Z9_GLYSO Coatomer subunit gamma; Found in the gene: LotjaGi1g1v0570700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110429820..110435990) extracted from Lotus japonicus Gifu genome v1.2.
TCCAGATCCATGTTGTTCCAATTTCCGAATGCTTCGCATAGTTAGATCATCATCCTTGCATTGAATTTACTGTATCTGAT TTCGATTCCGTATCGATCTTGCCATATAATTCGCAATGCAGATCGTTGAATGAGTTCTTATGATTAGTACTTGATAGTGT AGATCCTTTAGCTCTATTGTCGCATTTTCCTTGTTCACGAATCATGGTGTACTGTGACGAGTTCTGCTTGTTATATCGAA TTGATTAACGAAACGAATTGTGAATGTGATGCTAATTGTGATTTTGGTTGTTGAACAGTCGAGTATTCCCCCTTCCTGGG AATTGAAAAGGGGGCTGTTCTTCAGGAGGCAAGGGTTTTCAATGACCCGCAACTAGATGCTAGGAGATGTTCGCAGGTTT TTCATCTTCAACTAAACCATTCGCATGTTTAAATCTTGTTTCCGTAGATTTTTCGCAGTTGAATTTTGATGCTGTGTATG TTTTTTCATCTTATTTCTAGGTTATTACAAAGCTGCTATACCTCCTGAATCAGGGAGAGACATTTACAAAGGTATTGAGA TTTGAGAGATATCCATTACCATGCTTATTTCTGGATTGACCTTGTGGAATCATGTTGGTGCGATATGAATCCTTTTGATT TTATTATTTTTGCTAGGTCGAGGCTACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGATTGA GGAGAATGGTCTACCTGATGATAAAGGAGATCTCCCCCTCTGCAGATGAGGTTATATGTTAGATTCATATGTACGGTCTG TGCTGTGTGTATTACGAACTTAGATTATGACTGTTCTATTTCTTTAATCTTCTAACAGGTTATTATCGTCACAAGCTCTC TCATGAAGGACATGAATAGCAAGATTGATATGTACAGGGCAAATGCCATTCGAGTACTTTGTCGTATTACGGATGGAACA CTCCTTGCCCAAATTGAGCGGTATTTGAAGCAAGCAATTGTAGATAAGAATCCGGTTGTTGCAAGTGCGGCTTTAATCAG TGGCATTCATCTACTCCATGTAATAATAATTTCTATTTTGTAATTCTATATTTGCACATTCCATGTATGTTTCTTGATTA TTTTGCGCCTCCCTTTACAGACAAATCCTGAAATTGTGAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTCCAATCAAGA GCAGCTCTTGTCCAGTTTCATGCACTGGCTTTGCTACATCAGGTATGCTGCAAATGTGGTTTGGTTACTTTGTCATCCTT TAAGATCATTTAGTGATTCAGGGTTCACTTTATGTTGCAAGTGCAGTTTCTTAAATGATTGTTATACTTCTTGGCTTAAC AATGCTAATTATCATGAATGATGAATGTTCCTCATGAGCTAGTCTTCATTCTTTCGTACTTCATCTTCCCTTAATGAAAT GCATTTCTTTCAGTGATGCTTGACTCTTATATGCGTTTATTCATGCTGAATTTGACTGAACCAAAAGAAAGCAAAAGTTG CTCAAATTCACCTGTAGAAGTGGTCTTTGTTTGTTTGGTTTCTATTTCATCTACATGCTGTCTTTTACAGCTACATTTTT TAGCATGCCCATAATTTTACTCTTACCTCAATTTCAACTGCAATTTACAAGTGGTTGCTTCTTATTTACAGTGAAAAGTT TTCAAGTTACAGAGAGTTGATATCTGTATTGTTGTTGAAGTTGGCATAGTTTGTATTTTATTGACTGCATTAAATGTTAT TGCTGTAAATTTTGGAAAAGTCAGACTCTTCACATATCTAATGTAATTATCTTGTAAAATTACAGATTGAGCTGAACCAA TATGAACAATTTCTATTGAATAATTTGCATTTCCTTAAAGCCCTGCTATAAATTTCTCTTCTCATCGTTTGATTTTGCCT TCTCAGAAGCCTTTTTCCCTTATCTCACAGTAGACAAATATAAATTCTAAAGACGAATTTGTTGTACTTGGTGATTTAAA ACATTGCAGATACGGCAGAATGATCGTCTAGCTGTTAGCAAGCTGGTTACTAGCTTGACAAGGGGGACTGTTCGCTCACC TATAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGGTGTGTTTTTCTTTCCTGCGATCTTTGTTATGGAACGATATTT AGTTGCTGAAGCTTTATCTTTCATTATATTTGTAGGTTATTCGTGAGTCAGGTAATAATACACAGACAGGAGACCGCCCC TTCTATGATTTTCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGATTTTTGAATCTGCGAGGGCAATTACGGAGCT CAATGGTGTAACAAGCCGAGAATTAGCTCCCGCAATTACTGTTCTTCAGCTATTCTTAAGTTCTTCTAAGCCAGTCTTGA GATTTGCTGCTGTCCGCACCTTGAACAAGGTAAACCTTTAATTACTCAAATTTTAGCAGAAGTAATTTCTTATGCATTCA TAAAATTTGAAAAGGATATCTATGACATGTCTCCCAACTCTCAAGCCTCCCTCCCCAAGGGATGGCCATTTTGTTTTTTC CATTCTATATTTGAGAGATTTGATAAAAATCAAGATTTTCAATGTTCCTAAATATTCTCATAGGGCTTGTGTTGTTCAAA CTTGAGCTTTTTTTTTTAATTGTTTTGCATGGCTTTGAAATTTTGCAGGTGGCAATGACACATCCAATGTCAGTCACTAA CTGCAACATTGATATGGAAAGCTTAATATCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTACACTTTTGAAGA CCGGAAATGAATCAAGTGTGGATCGTCTTATGAAGCAGATTACAAATTTTATGTCTGATATTGCTGATGAGTTCAAAATT GTTGTTGTTGAAGCAATAAGATCACTGTGCCTGAAATTCCCATTAAAATATCGATCTCTGTATGTCTGCCATACTATAGT TTTCCTCTCCCCAAATAGTTTCCTATATTTTTCCCTAGATGATTGGCCTAAATTATTGGTTTGTATCCTGCTATTATTCT CAGGATGAACTTCCTGAGTAACATCCTTAGGGAAGAAGGTGGTTTTGATTACAAAAAGGCAATTGTAGATTCAATTGTGA TTCTCATTAGGGATATCCCTGATGCAAAAGAAACTGGACTGCTTCATCTCTGTGAGTTCATTGAGGATTGTGAATTCACT TATTTGTCCACACAGGTATTTTGGTTTGTCTTTTATTATTCACAGTTTGCGCATTCTTTTCCTGGAATTGTGTTTGTTGT TGTTAACAATTTTGGCCTCCTTGTACCGAAGATACTTCACTTCCTGGGAATTGAAGGGCCAAAAACATCGGATCCCAGCA AATACATTCGTTTCATTTATAATAGAGTACATCTCGAGAATGCAACTGTGAGGGCCAGTGCTGTGAGCACACTGGCAAGG TTCGGTGCTGCAGTTGATGAAATAAAGGTGTTACTTGTCTTTTGTTTATTATTTTATTTGTATGGTTTGCTAAAATTTTA TATTATATTTGGTGTTAACTTAATTTAAAATCTCCTACCTTACTCTTTCTCTTTCAGCCTCGCATATTTGTTCTGCTTAG GCGATGTCTCTTTGACAGTGATGATGAGGTGAATTTCTGTCTTGTTTTGTGAGGCATTTCTAGAAGTATATGGTTTGTGA TATTTATATCTGGTATTTTTATTTCTTTGCAGGTTCGCGATAGGGCAACCCTTTATCTGAACACACTTGGAGATGATGGT TCTGTTGTTGAGACTGATAAAGATGTAAATGACTTCCTGTTTGGGCCATTTGATATCCCACTTGTCAACCTGGAGTCTAG TTTGAAAAATTATGTAAGTCCATGGTATATTCTTGCACTCCATTAGTACATCACCTCATGTGTTTTATATGAATGCAGGA GCCTTCAGAAGAGGCTTTTAACATTAACTCTGTGCCGAAGGAGGTCAAGTCTCAACCACTTGCAGAGAAGAAAGCCCCTG GTAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGCCCCCCCGTCAACTACAGATGCATATGAGAGGATGCTTTCGTCC ATTCCGGAGTTTGCAAACTTTGGGAAGCTTTTTAAGGTTCTCACGCTTCACTTTGATTATTCTTTCACAATTCTACATTT TGTTTTTCTTTCTTGGTCTAATACAATGTATGTATTTTAATATTTCTTTCCAGTCCTCGCCACCCGTGGAGCTCACTGAA GCTGAGACAGAATATGCAGTTAATGTTGTCAAACATATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACAC AATACCGGAACAGTTATTGGAAGATGTAATAACAAATATAAGTTGAAATTTCATAAAGCAATCAAATTTCAGGTCTTGTT TGTAATTATTTCCCCCTATTACAGGTTATTGTAATTGTGGATTCCTCAGATGCTGAGGAATTCTCAGAGGTGTTCTCCAA GCCTCTCAGGTCTCTTCCTTACGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCTGAGGGAGTGCCAACAGTTG GAAAATTTTCTAACACACTGAAATTTTTTGTTAAAGAGGTGCTTGTTTCCCTTTACTTTTATGAAGCTTTATTGTTTTAT ATTATTTGATCCAGACACAATATGTATCATGATTATGTGTACATTTCAAGCATATAATACTTGTTTTCATTTCCTTCTAT TAGGGAATTTGTGGAAAACGGCCTATAATATTTTTAGAAAATCTAAAAGCACAAATTGGATCTTTTTCAGGTTGACCCAA CCACTGGTGAGACTGAAGATGATGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAAGTTGTTTCAGCAGATTACGTG TTGAAATTGGGGGTATCCAACTTCAGGAATGCATGGGAGAGCATGGGCCCTGATTGTGAGCGTGTGGATGAGTATGGTCT TGGTCCTAGGGAGAGCTTGGCTGAGGCTGTAAATACTGTGACCAACCTTCTTGGTTTGCAGCCCTGTGAGGTAAGCCAAT GATCAATGATGTTACTTGCTGCTTTGTTAACTATTTAACCATTGTAGTAGCACACAATGCCCTCACTACTGACCTACTTT TATTTTATTAAATTGATTGTGAGCAAGGCAAGGTGATGATACGATTTTTACTAGTTTTACTATAGTTTGATTGTTCTGAC CTTCTGCTTGTTGGATGCTCATGGGTGGTCTGAGGACCTGGGGCAGAAAAGGAAACTAATTAGAAAATGGTGTTTGGGAC GCCCTAACTGACTACTAAATACATTTAAATGGGCTTAGTTCTAGGACCTAACTGTCATTGCCAAACTCTAGTACAAAGAA GCCCATGCATGCTCATATCTATTTTGGCAGCATGTTTGTCTGTGCATGTGCACAAAGAACCTAAATTGAAAGAGGGATTT AGCTCCTCAAGGGACTCACTTAAATAAGTCATCACAACCATTGATACAAAAATCAATAGCAAATTAATGAGCACCATAAA TTTTTATACATGTGCATGTATAGATCATAATTTCAATGATTGATTTCTCAACCAACAGTCATAATGACTCACTTTAGAGG TGCCAAATCCTTGAAAGACATTCTTAGGCGCTTTTGTAACCAAAGACTTTTTACTCGATGGCTTACAAAGATCAAGCTCA GTGTATGAGTTTGATATTTCAAATGTAGAAGCAAAATATTGGCCAACATGTAAGAGTAATAATGTTGCTGCCAAACTCTA ACCACAAGCTGTCTATCCATGCATGTAAAACATTTTATTCAAAACATTTTATAAGAGATTCCACATGGTCTGAACACGTG GTTTGTACACTCGCCATGGAGTAAGATATTTCTCTCCATGATCACATAAGAAATTCTCAGATGAAAAGAGTACGGTGTCT CTTATTGGTTTGAAGGTGATATCTTTCTCACAAATTTTTATTTGTTTGATCTGCAGGGTACAGAGGTTGTTCCACCCAAT TCAAGATCACACACATGTCTATTGTCAGGTGTATTCATAGGGAATGTAAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGA TGGTCCAAAAGATGTTGCAATGAAACTGACTGTCAGATCCGAGGATGAAACTGTCAGCGATGCCATTCATGAGATAGTGG CAAGCGGGTGA
CDS sequence (LotjaGi1g1v0570700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTTCCAATTTCCGAATGCTTCGCATATCGAGTATTCCCCCTTCCTGGGAATTGAAAAGGGGGCTGTTCTTCAGGA GGCAAGGGTTTTCAATGACCCGCAACTAGATGCTAGGAGATGTTCGCAGGTTATTACAAAGCTGCTATACCTCCTGAATC AGGGAGAGACATTTACAAAGGTCGAGGCTACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATATGGGA TTGAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCCCCCTCTGCAGATGAGGTTATTATCGTCACAAGCTCTCTCAT GAAGGACATGAATAGCAAGATTGATATGTACAGGGCAAATGCCATTCGAGTACTTTGTCGTATTACGGATGGAACACTCC TTGCCCAAATTGAGCGGTATTTGAAGCAAGCAATTGTAGATAAGAATCCGGTTGTTGCAAGTGCGGCTTTAATCAGTGGC ATTCATCTACTCCATACAAATCCTGAAATTGTGAAAAGGTGGAGCAATGAGGTTCAGGAAGCTGTCCAATCAAGAGCAGC TCTTGTCCAGTTTCATGCACTGGCTTTGCTACATCAGATACGGCAGAATGATCGTCTAGCTGTTAGCAAGCTGGTTACTA GCTTGACAAGGGGGACTGTTCGCTCACCTATAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCGTGAGTCA GGTAATAATACACAGACAGGAGACCGCCCCTTCTATGATTTTCTTGAGAGTTGCCTTCGTCACAAGTCAGAGATGGTGAT TTTTGAATCTGCGAGGGCAATTACGGAGCTCAATGGTGTAACAAGCCGAGAATTAGCTCCCGCAATTACTGTTCTTCAGC TATTCTTAAGTTCTTCTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACACATCCAATG TCAGTCACTAACTGCAACATTGATATGGAAAGCTTAATATCTGACCAGAACAGAAGCATTGCCACACTTGCTATTACTAC ACTTTTGAAGACCGGAAATGAATCAAGTGTGGATCGTCTTATGAAGCAGATTACAAATTTTATGTCTGATATTGCTGATG AGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCACTGTGCCTGAAATTCCCATTAAAATATCGATCTCTGATGAACTTC CTGAGTAACATCCTTAGGGAAGAAGGTGGTTTTGATTACAAAAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGGGA TATCCCTGATGCAAAAGAAACTGGACTGCTTCATCTCTGTGAGTTCATTGAGGATTGTGAATTCACTTATTTGTCCACAC AGATACTTCACTTCCTGGGAATTGAAGGGCCAAAAACATCGGATCCCAGCAAATACATTCGTTTCATTTATAATAGAGTA CATCTCGAGAATGCAACTGTGAGGGCCAGTGCTGTGAGCACACTGGCAAGGTTCGGTGCTGCAGTTGATGAAATAAAGCC TCGCATATTTGTTCTGCTTAGGCGATGTCTCTTTGACAGTGATGATGAGGTTCGCGATAGGGCAACCCTTTATCTGAACA CACTTGGAGATGATGGTTCTGTTGTTGAGACTGATAAAGATGTAAATGACTTCCTGTTTGGGCCATTTGATATCCCACTT GTCAACCTGGAGTCTAGTTTGAAAAATTATGAGCCTTCAGAAGAGGCTTTTAACATTAACTCTGTGCCGAAGGAGGTCAA GTCTCAACCACTTGCAGAGAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGCCCCCCCGTCAA CTACAGATGCATATGAGAGGATGCTTTCGTCCATTCCGGAGTTTGCAAACTTTGGGAAGCTTTTTAAGTCCTCGCCACCC GTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTTGTCAAACATATTTTTGATAGGCATGTTGTGTTCCAGTA CAACTGCACAAACACAATACCGGAACAGTTATTGGAAGATGTTATTGTAATTGTGGATTCCTCAGATGCTGAGGAATTCT CAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTACGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCTGAG GGAGTGCCAACAGTTGGAAAATTTTCTAACACACTGAAATTTTTTGTTAAAGAGGTTGACCCAACCACTGGTGAGACTGA AGATGATGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAAGTTGTTTCAGCAGATTACGTGTTGAAATTGGGGGTAT CCAACTTCAGGAATGCATGGGAGAGCATGGGCCCTGATTGTGAGCGTGTGGATGAGTATGGTCTTGGTCCTAGGGAGAGC TTGGCTGAGGCTGTAAATACTGTGACCAACCTTCTTGGTTTGCAGCCCTGTGAGGGTACAGAGGTTGTTCCACCCAATTC AAGATCACACACATGTCTATTGTCAGGTGTATTCATAGGGAATGTAAAGGTGCTTGTGCGGTTGTCTTTTGGACTTGATG GTCCAAAAGATGTTGCAATGAAACTGACTGTCAGATCCGAGGATGAAACTGTCAGCGATGCCATTCATGAGATAGTGGCA AGCGGGTGA
Protein sequence (LotjaGi1g1v0570700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFQFPNASHIEYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDMG LRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLAQIERYLKQAIVDKNPVVASAALISG IHLLHTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPIAQCLLIRYTSQVIRES GNNTQTGDRPFYDFLESCLRHKSEMVIFESARAITELNGVTSRELAPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPM SVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNF LSNILREEGGFDYKKAIVDSIVILIRDIPDAKETGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRFIYNRV HLENATVRASAVSTLARFGAAVDEIKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGDDGSVVETDKDVNDFLFGPFDIPL VNLESSLKNYEPSEEAFNINSVPKEVKSQPLAEKKAPGKKPTGLGAPPSAPPSTTDAYERMLSSIPEFANFGKLFKSSPP VELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLEDVIVIVDSSDAEEFSEVFSKPLRSLPYDSPGQTFVAFEKPE GVPTVGKFSNTLKFFVKEVDPTTGETEDDGVEDEYQLEDLEVVSADYVLKLGVSNFRNAWESMGPDCERVDEYGLGPRES LAEAVNTVTNLLGLQPCEGTEVVPPNSRSHTCLLSGVFIGNVKVLVRLSFGLDGPKDVAMKLTVRSEDETVSDAIHEIVA SG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 6 | 880 | 875 | 0.0 | ||
| PANTHER | 11 | 882 | 872 | 0.0 | – | |
| PANTHER | 11 | 882 | 872 | 0.0 | ||
| Gene3D | 18 | 311 | 294 | 2.0E-114 | ||
| Pfam | 24 | 535 | 512 | 2.6E-128 | ||
| SUPERFAMILY | 24 | 535 | 512 | 3.26E-92 | ||
| MobiDBLite | 587 | 614 | 28 | - | – | |
| SUPERFAMILY | 610 | 766 | 157 | 5.75E-56 | ||
| Gene3D | 611 | 763 | 153 | 1.6E-57 | ||
| Pfam | 617 | 762 | 146 | 1.9E-56 | ||
| Gene3D | 764 | 880 | 117 | 3.7E-37 | ||
| Pfam | 765 | 879 | 115 | 5.7E-36 | ||
| SUPERFAMILY | 767 | 879 | 113 | 6.08E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. | ||
| Cellular component | COPI vesicle coat | One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state. |
Expression pattern of LotjaGi1g1v0570700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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