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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0022139 |
| Transcript ID | Lj0g3v0022139.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 67 | 67 | – | – | |
| Gene3D | 31 | 69 | 39 | 2.30E-05 | ||
| Phobius | 68 | 88 | 21 | – | – | |
| PANTHER | 69 | 275 | 207 | 0 | – | |
| PANTHER | 69 | 275 | 207 | 0 | – | |
| TMHMM | 71 | 88 | 18 | – | – | |
| Phobius | 89 | 93 | 5 | – | – | |
| TMHMM | 92 | 114 | 23 | – | – | |
| Phobius | 94 | 114 | 21 | – | – | |
| Phobius | 115 | 683 | 569 | – | – | |
| Pfam | 153 | 502 | 350 | 8.30E-175 | ||
| SUPERFAMILY | 168 | 213 | 46 | 2.11E-07 | ||
| PANTHER | 305 | 843 | 539 | 0 | – | |
| PANTHER | 305 | 843 | 539 | 0 | – | |
| SUPERFAMILY | 370 | 490 | 121 | 2.11E-07 | ||
| MobiDBLite | 502 | 525 | 24 | – | – | |
| Pfam | 525 | 843 | 319 | 1.90E-155 | ||
| SUPERFAMILY | 604 | 706 | 103 | 2.11E-07 | ||
| TMHMM | 683 | 705 | 23 | – | – | |
| Phobius | 684 | 707 | 24 | – | – | |
| Phobius | 708 | 712 | 5 | – | – | |
| Phobius | 713 | 737 | 25 | – | – | |
| TMHMM | 715 | 737 | 23 | – | – | |
| Phobius | 738 | 757 | 20 | – | – | |
| Phobius | 758 | 776 | 19 | – | – | |
| TMHMM | 758 | 780 | 23 | – | – | |
| Phobius | 777 | 808 | 32 | – | – | |
| Phobius | 809 | 831 | 23 | – | – | |
| TMHMM | 809 | 831 | 23 | – | – | |
| Phobius | 832 | 843 | 12 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj0g3v0022139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0022139.1, powered by CORGI.
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