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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0022139 |
| Transcript ID | Lj0g3v0022139.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase-like protein D4-like [Glycine max] gi|356501469|ref|XP_003519547.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 198 | 198 | – | – | |
| Gene3D | 31 | 105 | 75 | 4.60E-18 | ||
| SUPERFAMILY | 37 | 100 | 64 | 1.27E-10 | – | |
| PANTHER | 45 | 404 | 360 | 0 | – | |
| PANTHER | 45 | 404 | 360 | 0 | – | |
| ProSiteProfiles | 47 | 91 | 45 | 8.772 | ||
| Pfam | 47 | 95 | 49 | 1.70E-14 | – | |
| Phobius | 199 | 217 | 19 | – | – | |
| TMHMM | 200 | 217 | 18 | – | – | |
| Phobius | 218 | 222 | 5 | – | – | |
| TMHMM | 221 | 243 | 23 | – | – | |
| Phobius | 223 | 243 | 21 | – | – | |
| Phobius | 244 | 812 | 569 | – | – | |
| Pfam | 282 | 1028 | 747 | 0 | ||
| SUPERFAMILY | 297 | 342 | 46 | 2.81E-07 | ||
| PANTHER | 434 | 1028 | 595 | 0 | – | |
| PANTHER | 434 | 1028 | 595 | 0 | – | |
| SUPERFAMILY | 499 | 619 | 121 | 2.81E-07 | ||
| MobiDBLite | 631 | 654 | 24 | – | – | |
| SUPERFAMILY | 733 | 835 | 103 | 2.81E-07 | ||
| TMHMM | 812 | 834 | 23 | – | – | |
| Phobius | 813 | 836 | 24 | – | – | |
| Phobius | 837 | 841 | 5 | – | – | |
| Phobius | 842 | 869 | 28 | – | – | |
| TMHMM | 844 | 866 | 23 | – | – | |
| Phobius | 870 | 945 | 76 | – | – | |
| TMHMM | 938 | 960 | 23 | – | – | |
| Phobius | 946 | 965 | 20 | – | – | |
| Phobius | 966 | 970 | 5 | – | – | |
| Phobius | 971 | 992 | 22 | – | – | |
| TMHMM | 975 | 992 | 18 | – | – | |
| Phobius | 993 | 1003 | 11 | – | – | |
| Phobius | 1004 | 1024 | 21 | – | – | |
| TMHMM | 1005 | 1024 | 20 | – | – | |
| Phobius | 1025 | 1042 | 18 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj0g3v0022139.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0022139.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.