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Lj0g3v0107819.1

Overview

Field Value
Gene ID Lj0g3v0107819
Transcript ID Lj0g3v0107819.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description E3 ubiquitin-protein ligase RNF19A [Medicago truncatula] gi|357489519|ref|XP_003615047.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 29 29 – –
MobiDBLite
mobidb-lite
41 77 37 – –
PANTHER
PTHR11685
102 323 222 5.30E-89
IPR031127
PANTHER
PTHR11685:SF133
102 323 222 5.30E-89 –
Gene3D
G3DSA:3.30.40.10
104 180 77 3.40E-06
IPR013083
SUPERFAMILY
SSF57850
118 200 83 1.29E-15 –
ProSiteProfiles
PS50089
122 167 46 10.011
IPR001841
Pfam
PF00097
122 167 46 6.20E-05
IPR018957
ProSitePatterns
PS00518
140 149 10 –
IPR017907
SMART
SM00647
190 252 63 1.20E-13
IPR002867
Pfam
PF01485
193 252 60 4.40E-11
IPR002867
SUPERFAMILY
SSF57850
203 258 56 1.96E-09 –
SMART
SM00647
265 321 57 0.13
IPR002867
SUPERFAMILY
SSF57850
271 325 55 2.12E-12 –
Pfam
PF01485
274 319 46 9.30E-08
IPR002867

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj0g3v0107819.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0107819.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.