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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0097549 |
| Transcript ID | Lj0g3v0097549.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | IBR domain containing protein [Medicago truncatula] gi|357472415|ref|XP_003606492.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | 7 | 27 | 21 | – | – | |
| PANTHER | 17 | 518 | 502 | 1.60E-218 | ||
| PANTHER | 17 | 518 | 502 | 1.60E-218 | – | |
| Coils | 74 | 108 | 35 | – | – | |
| Pfam | 172 | 285 | 114 | 1.80E-18 | – | |
| Gene3D | 304 | 366 | 63 | 3.00E-05 | ||
| SUPERFAMILY | 305 | 387 | 83 | 5.89E-15 | – | |
| CDD | 306 | 351 | 46 | 0.00319245 | – | |
| Pfam | 307 | 351 | 45 | 4.30E-05 | ||
| ProSiteProfiles | 307 | 351 | 45 | 9.539 | ||
| ProSitePatterns | 325 | 334 | 10 | – | ||
| SMART | 374 | 442 | 69 | 7.40E-15 | ||
| Pfam | 375 | 442 | 68 | 7.00E-14 | ||
| SUPERFAMILY | 389 | 447 | 59 | 9.71E-07 | – | |
| SMART | 455 | 512 | 58 | 0.0078 | ||
| SUPERFAMILY | 456 | 519 | 64 | 3.00E-16 | – | |
| Pfam | 457 | 510 | 54 | 7.40E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0097549.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0097549.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.