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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013516
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.860s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj4g3v2265030.1
n.a. phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| chr4 31439564 31445894 +
2 domain predictions
1 GO term
Lj5g3v1533480.1
n.a. phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| chr5 22502927 22510099 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.1
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323062 54330218 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.2
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328628 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.3
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328849 -
2 domain predictions
1 GO term
LotjaGi5g1v0235100.4
n.a. Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 LjG1.1_chr5 54323402 54328859 -
2 domain predictions
1 GO term
LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
2 domain predictions
1 GO term