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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1533480 |
| Transcript ID | Lj5g3v1533480.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | – | – | |
| PIRSF | 1 | 1124 | 1124 | 0 | ||
| MobiDBLite | 40 | 61 | 22 | – | – | |
| Pfam | 69 | 185 | 117 | 9.20E-39 | ||
| SUPERFAMILY | 74 | 186 | 113 | 8.89E-24 | ||
| PANTHER | 111 | 542 | 432 | 0 | – | |
| PANTHER | 111 | 542 | 432 | 0 | – | |
| PRINTS | 133 | 155 | 23 | 1.60E-109 | ||
| SUPERFAMILY | 198 | 398 | 201 | 4.58E-53 | ||
| ProSiteProfiles | 218 | 391 | 174 | 63.035 | ||
| Pfam | 218 | 401 | 184 | 5.10E-34 | ||
| SMART | 218 | 411 | 194 | 1.90E-10 | ||
| PRINTS | 233 | 252 | 20 | 1.60E-109 | ||
| PRINTS | 318 | 339 | 22 | 1.60E-109 | ||
| ProSitePatterns | 318 | 327 | 10 | – | ||
| SUPERFAMILY | 409 | 587 | 179 | 5.20E-58 | ||
| Pfam | 413 | 588 | 176 | 3.30E-59 | ||
| PRINTS | 431 | 451 | 21 | 1.60E-109 | ||
| PRINTS | 516 | 535 | 20 | 1.60E-109 | ||
| PRINTS | 549 | 567 | 19 | 1.60E-109 | ||
| PANTHER | 617 | 735 | 119 | 0 | – | |
| ProSiteProfiles | 617 | 687 | 71 | 17.539 | ||
| PANTHER | 617 | 735 | 119 | 0 | – | |
| SMART | 619 | 685 | 67 | 1.10E-06 | ||
| PRINTS | 620 | 636 | 17 | 1.60E-109 | ||
| Pfam | 620 | 734 | 115 | 1.10E-20 | ||
| SUPERFAMILY | 623 | 730 | 108 | 2.36E-12 | ||
| Gene3D | 623 | 748 | 126 | 4.30E-15 | – | |
| TIGRFAM | 624 | 740 | 117 | 2.70E-09 | ||
| CDD | 628 | 734 | 107 | 8.59E-08 | – | |
| PRINTS | 639 | 654 | 16 | 1.60E-109 | ||
| PRINTS | 712 | 729 | 18 | 1.60E-109 | ||
| PRINTS | 732 | 752 | 21 | 1.60E-109 | ||
| SMART | 749 | 818 | 70 | 1.00E-04 | ||
| Pfam | 750 | 872 | 123 | 1.00E-23 | ||
| ProSiteProfiles | 750 | 802 | 53 | 13.387 | ||
| CDD | 761 | 872 | 112 | 1.80E-06 | – | |
| SUPERFAMILY | 764 | 870 | 107 | 7.50E-10 | ||
| Gene3D | 767 | 872 | 106 | 1.20E-09 | – | |
| PANTHER | 872 | 1121 | 250 | 0 | – | |
| PANTHER | 872 | 1121 | 250 | 0 | – | |
| SMART | 894 | 959 | 66 | 4.00E-05 | ||
| CDD | 899 | 949 | 51 | 0.00832704 | – | |
| ProSiteProfiles | 901 | 1120 | 220 | 33.523 | ||
| SUPERFAMILY | 955 | 1110 | 156 | 2.20E-10 | ||
| Gene3D | 961 | 1113 | 153 | 7.30E-14 | ||
| Pfam | 1006 | 1116 | 111 | 1.40E-07 | ||
| SMART | 1006 | 1118 | 113 | 3.70E-08 | ||
| CDD | 1011 | 1114 | 104 | 1.99E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphorelay sensor kinase activity | Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Biological process | Detection of visible light | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. | ||
| Biological process | Red, far-red light phototransduction | The sequence of reactions within a cell required to convert absorbed photons from red or far-red light into a molecular signal; the red, far-red light range is defined as having a wavelength within the range 660-730 nm. | ||
| Molecular function | Photoreceptor activity | The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. | ||
| Biological process | Protein-tetrapyrrole linkage | The covalent linking of a tetrapyrrole to a protein. | ||
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. |
Expression pattern of Lj5g3v1533480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1533480.1, powered by CORGI.
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