Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR013516 is a Phytochrome chromophore binding site.
<p>Phytochrome [[cite:PUB00000104], [cite:PUB00000736], [cite:PUB00097030]] is a plant protein that acts as a regulatory photoreceptor and which mediates red-light effects on a wide variety of physiological and molecular responses. Phytochrome can undergo a reversible photochemical conversion between a biologically inactive red light-absorbing form and the active far-red light-absorbing form. Phytochrome is a dimer of identical 124 Kd subunits, each of which contains a covalently attached linear tetrapyrrole chromophore. The chromophore is attached to a cysteine which is located in a highly conserved region that can be used as a signature pattern. Synechocystis strain PCC 6803 hypothetical protein slr0473 contains a domain similar to that of plants phytochrome and seems to also bind a chromophore.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein-chromophore linkage | The covalent or noncovalent attachment of a chromophore to a protein. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Phytochrome b [Lotus japonicus] gi|121309520|dbj|BAF44083.1| | 44 | ||
| – | Phytochrome A [Lotus japonicus] gi|477504379|dbj|BAN14699.1| | 40 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT1G09570.3 phytochrome A; Swiss-Prot: sp|P93673|PHYA_LATSA Phytochrome type A; TrEMBL-Plants: tr|N0DN12|N0DN12_LOTJA Phytochrome; Found in the gene: LotjaGi5g1v0235100 | 47 | ||
| – | Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 | 49 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 14.29 |