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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0062300 |
| Transcript ID | LotjaGi6g1v0062300.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat cell cycle regulatory protein; TAIR: AT5G13840.1 FIZZY-related 3; Swiss-Prot: sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3; TrEMBL-Plants: tr|A0A0L9U9C3|A0A0L9U9C3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0062300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11324806..11327810) extracted from Lotus japonicus Gifu genome v1.2.
AAAATAACATTAGGGAATTGAATTCCAACAAATGGATGAATGTTGGACAGAGCAAACAAAACAAACCTTAACGGCTACTT GAGAAACCTAGTTTGGTAATTGACCATTGAAATCTGTTTAAGGAAACAAATTTATGAGCTTACCAATACTGTTCCCTCTT TCTATTTCAGCTCCACAATCCGACCGTTGAGAATCTTCTTCTTCTTCTTCTTCTTCAACCCTCTCTCTCTCTTTCTGTCT TTCTACTATTCGCTTTCACAGTGAGAGTTAGAGTTCACCATTTCTTCACTGAGAGAAGAAGCAAAACCCAAAAATGGAGT CACCACAAGCAAAAAAAACTGGGTTGAACCTGCCATCTACAATGTCAGGGACATCACTACGCCTCGAAACATTCTCTGCA TCATCTTCATTCCGATCAATCTCGAACCTGTCACCATCAAAGCCTTCAACAACCAGTGACAGGTTCATCCCGTGTAGATC GTCTTCGAGGCTGCACACATTCGGCCTCATTGACAAACCCTCGCCGGTGAAAGAAGGGAGTAACGAGGCTTATTCCAGGT TGTTGAAGTCTGAGATTTTTGGTTCTGATTTTGCTTCTCCTTCTCCTTCTTCTCCTGCAGGTAACTCTGGTTCTCCGATG AGTAGTCCCAGCAAGAATATGTTGCGGTTTAAGACGGATCATTCTGGACCTTCCTCGCCGTTTTCGCCTTCGATTCTTGG TCACCATTCTGGGTTCTCTTCTGAGTCTTCAACGCCGCCTAAGCCTCCGAGGAAAGTTCCCAAGACACCCCACAAGGTAA GCTTTGATTATTCCTCTTCCTTTTTGAATTTTGAGCATGAAATGTAATTGGGTTTTTGAATGTTGATTGATGAAACTGGA CATGAATGTGTGCAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAGAA TGTTCTAGCTGTGGGGCTTGGAACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAGAGTGAGTCTATGCCTGCCAACTG TTTGATACAATGTTTATGAGAAACACCTCTCAAGAAGTTTATTTAAAGTGGACTTATCTTTATGTGGTTTTGTTCTTCAG GTGACTAAGCTTTGTGACTTGGGGCCTTATGATGGTGTTTGTTCTGTCCAGTGGACCAAAGAGGGTTCTTTTATTTCGGT CGGTACATCGCTTGGTCAAGTTCAGGTACCTTGTTGCTAGCTCAATTTGATTTGGTTTATGATTATCCATTCATGTATTT GATGATTGAGAATAAGAGTGAGAACTTTGGCCTTGTGGAACAGGTTTGGGATGGAACTCAATGCAAGAAGGTCAGAACAA TGGGAGGGCATCAGACAAGAACGGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGGGACAGGAACATC CTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTGGAAAACTAGTTGGCCACAAGTCTGAGGTAAAAAGATTATGTAA ATTATGTGTTGTGCCACACACACAATGAATGAACTTGTTATGTTAAAGATCAATTGGAATTATAGAAATTGATAGCAGTT GTTATCCTTCAACTTGCAGGTATGTGGATTGAAATGGTCCTGTGATGATAGGGAACTTGCTTCTGGTGGTAATGATAACC AGGTATGCCATTTTGTGTAATGATTAAAATCAAACACACAGAAAAGTGTTTTATTTTATCCTTCTTGTTTGGTTTTACTA CTGACTTGCCTCTTCTAATGTCATGTTTTGTAGCTTTTGGTATGGAATCAGCACTCTCAACAACCAGCTCTGAGACTTAC AGAACACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAGAGCAACCTCCTTGTGTCTGGTGGTGGAACTGCCG ATAGGTGTATTCGTTTCTGGAACACTACAAATGGCCATCAATTGAACCATGTTGACACTGGGAGCCAGGTTTATTTCTCA GCTCTATAAAATAATCCTTATTCTGACATGAGAGTGTCTCAGCAAACTAATTCAATGCTTAATCAATCTGCAGGTGTGCA ACCTTGCTTGGAGTAAAAATGTGAATGAGATAGTAAGTACTCATGGGTACTCCCAAAATCAGATTATGGTGTGGAAATAT CCATCACTATCAAAGGTATTACTTTACTTTTAAGTTTTGACAGTTCAAGATATTTTAGAGACATTCCAACCAGAAAATGT CTTAACAATATTGACAAATTTTGATTAGGTTGCAACTCTAACTGGCCATAGCATGCGAGTGCTGTACCTTGCAATGTCTC CTGATGGTCAGGTACTGATATATGTCCACATAACATGATTCCTTTTCTCTGTCATACAAATAAATTATTCTTGGTTAACA CCATCTTTAATCTAATGTGGTGCATGCACTGTACAATTGCAGACAATAGTAACTGGTGCAGGGGATGAGACTCTGCGGTT CTGGAATGTTTTTCCATCAATGAAAACACCTGTAAGCATTGTGATTTGTGACCAATTTTTCAGTCATGCTTATTTTTTTC TCCAATGCTGCTTGGCCTCTCCTAACTTTTATTTTTAATTTTCTTCAGGCCCCAGTTAAAGACACTGGCCTTTGGTCACT GGGACGCACCCAAATTCGATGACCATTAGCACGGCTCCAGTGAAATTCTTATCATTACCAAAAGGAGAAAATTATCTGTA TATGGATTGATACTGTCATTTGTTATTGATTACCATTAGTCTAATAAATTGTGTAAAGTTTTCATTCAAAATTAATGGTG TTTTATAGTTGAATTCATAGTCTCTTGTTTTTTCATTCTTTTTACTGCAATCTGTTACAGCTTTTTTTTTTTTCCCGAGT CTTTTCCCCTCACCACAATTGTGCACATGTATAAGGCACAATTGCCTCAATGACAACAACCTTTTAAGAACCAACTTTAC ACTTGAGTAAGAAATTAGAAAGGTTTTCGCGCTGTTACAAGTTTA
CDS sequence (LotjaGi6g1v0062300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCACCACAAGCAAAAAAAACTGGGTTGAACCTGCCATCTACAATGTCAGGGACATCACTACGCCTCGAAACATT CTCTGCATCATCTTCATTCCGATCAATCTCGAACCTGTCACCATCAAAGCCTTCAACAACCAGTGACAGGTTCATCCCGT GTAGATCGTCTTCGAGGCTGCACACATTCGGCCTCATTGACAAACCCTCGCCGGTGAAAGAAGGGAGTAACGAGGCTTAT TCCAGGTTGTTGAAGTCTGAGATTTTTGGTTCTGATTTTGCTTCTCCTTCTCCTTCTTCTCCTGCAGGTAACTCTGGTTC TCCGATGAGTAGTCCCAGCAAGAATATGTTGCGGTTTAAGACGGATCATTCTGGACCTTCCTCGCCGTTTTCGCCTTCGA TTCTTGGTCACCATTCTGGGTTCTCTTCTGAGTCTTCAACGCCGCCTAAGCCTCCGAGGAAAGTTCCCAAGACACCCCAC AAGGTTCTGGATGCTCCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCCTCACAGAATGTTCTAGCTGT GGGGCTTGGAACTTGTGTTTATCTCTGGAGTGCTTCAAACAGCAGAGTGACTAAGCTTTGTGACTTGGGGCCTTATGATG GTGTTTGTTCTGTCCAGTGGACCAAAGAGGGTTCTTTTATTTCGGTCGGTACATCGCTTGGTCAAGTTCAGGTTTGGGAT GGAACTCAATGCAAGAAGGTCAGAACAATGGGAGGGCATCAGACAAGAACGGGTGTCTTGGCATGGAATTCTCGCATTTT GGCTTCAGGGAGCAGGGACAGGAACATCCTTCAGCATGACATGAGGGTTTCAAGTGACTTTGTTGGAAAACTAGTTGGCC ACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGATAGGGAACTTGCTTCTGGTGGTAATGATAACCAGCTTTTG GTATGGAATCAGCACTCTCAACAACCAGCTCTGAGACTTACAGAACACACTGCTGCTGTGAAGGCCATTGCTTGGTCACC TCACCAGAGCAACCTCCTTGTGTCTGGTGGTGGAACTGCCGATAGGTGTATTCGTTTCTGGAACACTACAAATGGCCATC AATTGAACCATGTTGACACTGGGAGCCAGGTGTGCAACCTTGCTTGGAGTAAAAATGTGAATGAGATAGTAAGTACTCAT GGGTACTCCCAAAATCAGATTATGGTGTGGAAATATCCATCACTATCAAAGGTTGCAACTCTAACTGGCCATAGCATGCG AGTGCTGTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTCTGCGGTTCTGGAATG TTTTTCCATCAATGAAAACACCTGCCCCAGTTAAAGACACTGGCCTTTGGTCACTGGGACGCACCCAAATTCGATGA
Protein sequence (LotjaGi6g1v0062300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPQAKKTGLNLPSTMSGTSLRLETFSASSSFRSISNLSPSKPSTTSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNEAY SRLLKSEIFGSDFASPSPSSPAGNSGSPMSSPSKNMLRFKTDHSGPSSPFSPSILGHHSGFSSESSTPPKPPRKVPKTPH KVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWSASNSRVTKLCDLGPYDGVCSVQWTKEGSFISVGTSLGQVQVWD GTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFVGKLVGHKSEVCGLKWSCDDRELASGGNDNQLL VWNQHSQQPALRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNVNEIVSTH GYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTPAPVKDTGLWSLGRTQIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 5 | 478 | 474 | 2.9E-265 | – | |
| PANTHER | 5 | 478 | 474 | 2.9E-265 | ||
| MobiDBLite | 30 | 53 | 24 | - | – | |
| MobiDBLite | 93 | 148 | 56 | - | – | |
| MobiDBLite | 93 | 162 | 70 | - | – | |
| Gene3D | 114 | 455 | 342 | 5.4E-120 | ||
| SUPERFAMILY | 154 | 454 | 301 | 6.41E-58 | ||
| SMART | 156 | 197 | 42 | 200.0 | ||
| ProSiteProfiles | 193 | 462 | 270 | 32.957 | ||
| SMART | 199 | 240 | 42 | 1.3 | ||
| SMART | 243 | 280 | 38 | 0.88 | ||
| SMART | 284 | 323 | 40 | 8.5E-7 | ||
| ProSiteProfiles | 291 | 332 | 42 | 12.547 | ||
| Pfam | 314 | 450 | 137 | 3.0E-5 | ||
| SMART | 326 | 368 | 43 | 5.5E-5 | ||
| ProSiteProfiles | 333 | 377 | 45 | 8.537 | ||
| ProSitePatterns | 355 | 369 | 15 | - | ||
| SMART | 414 | 453 | 40 | 9.7E-8 | ||
| ProSiteProfiles | 421 | 454 | 34 | 14.452 | ||
| ProSitePatterns | 440 | 454 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Anaphase-promoting complex binding | Interacting selectively and non-covalently with an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. | ||
| Molecular function | Ubiquitin-protein transferase activator activity | Increases the activity of a ubiquitin-protein transferase, an enzyme that catalyzes the covalent attachment of ubiquitin to lysine in a substrate protein. | ||
| Biological process | Positive regulation of ubiquitin protein ligase activity | Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity. |
Expression pattern of LotjaGi6g1v0062300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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