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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR014876
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 18 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.389s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116289.1
n.a. PREDICTED: glutamic acid-rich protein-like [Cicer arietinum] gi|502099577|ref|XP_004491513.1| chr0 51128617 51134725 -
2 domain predictions
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Lj1g3v1486260.1
n.a. PREDICTED: protein DEK-like [Cicer arietinum] gi|502133324|ref|XP_004501721.1| chr1 17768677 17776570 -
2 domain predictions
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Lj1g3v1486260.2
n.a. PREDICTED: protein DEK-like [Cicer arietinum] gi|502133324|ref|XP_004501721.1| chr1 17768677 17776570 -
2 domain predictions
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Lj1g3v1486260.3
n.a. PREDICTED: protein DEK-like [Cicer arietinum] gi|502133324|ref|XP_004501721.1| chr1 17768677 17776570 -
2 domain predictions
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Lj2g3v1831970.1
n.a. PREDICTED: upstream activation factor subunit spp27-like isoform 1 [Glycine max] gi|356496858|ref|XP_003517282.1| chr2 27672233 27677814 +
2 domain predictions
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Lj2g3v2538590.1
n.a. Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| chr2 35107944 35111113 -
2 domain predictions
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Lj4g3v0120100.1
n.a. PREDICTED: upstream activation factor subunit UAF30-like [Fragaria vesca subsp]. vesca] gi|470115751|ref|XP_004294055.1| chr4 1213340 1216952 -
2 domain predictions
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Lj4g3v0120100.2
n.a. SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] gi|18415906|ref|NP_567661.1| chr4 1214020 1216952 -
2 domain predictions
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Lj4g3v3014230.1
n.a. PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sativus] gi|449462521|ref|XP_004148989.1| chr4 39991136 39993763 +
2 domain predictions
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Lj6g3v0815560.1
n.a. Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1| chr6 8017786 8021527 -
2 domain predictions
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LotjaGi1g1v0016500.1
n.a. Protein DEK; TAIR: AT5G55660.1 DEK domain-containing chromatin associated protein; Swiss-Prot: sp|P35659|DEK_HUMAN Protein DEK; TrEMBL-Plants: tr|G7K4Q4|G7K4Q4_MEDTR DEK carboxy-terminal domain protein; Found in the gene: LotjaGi1g1v0016500 LjG1.1_chr1 2108735 2116958 -
2 domain predictions
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LotjaGi1g1v0336300_LC.1
n.a. Protein DEK; TAIR: AT3G48710.1 DEK domain-containing chromatin associated protein; Swiss-Prot: sp|Q7TNV0|DEK_MOUSE Protein DEK; TrEMBL-Plants: tr|K7KL81|K7KL81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0336300_LC LjG1.1_chr1 79574036 79582262 -
2 domain predictions
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LotjaGi1g1v0793500.1
n.a. RNA polymerase II transcriptional coactivator KELP; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP; TrEMBL-Plants: tr|A0A151TXZ1|A0A151TXZ1_CAJCA RNA polymerase II transcriptional coactivator KELP; Found in the gene: LotjaGi1g1v0793500 LjG1.1_chr1 136483191 136486753 +
2 domain predictions
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LotjaGi1g1v0793500.2
n.a. RNA polymerase II transcriptional coactivator KELP; TAIR: AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP); Swiss-Prot: sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP; TrEMBL-Plants: tr|A0A151TXZ1|A0A151TXZ1_CAJCA RNA polymerase II transcriptional coactivator KELP; Found in the gene: LotjaGi1g1v0793500 LjG1.1_chr1 136483391 136486582 +
2 domain predictions
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LotjaGi2g1v0398300.1
n.a. Upstream activation factor subunit spp27; TAIR: AT3G19080.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1J943|I1J943_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0398300 LjG1.1_chr2 89550480 89556417 +
2 domain predictions
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LotjaGi4g1v0008600.1
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 LjG1.1_chr4 1179314 1182992 -
2 domain predictions
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LotjaGi4g1v0008600.2
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 LjG1.1_chr4 1179966 1182466 -
2 domain predictions
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LotjaGi6g1v0151600.1
n.a. Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1KYE8|I1KYE8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0151600 LjG1.1_chr6 42807888 42811830 -
2 domain predictions
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