Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0008600 |
| Transcript ID | LotjaGi4g1v0008600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Upstream activation factor subunit spp27; TAIR: AT4G22360.1 SWIB complex BAF60b domain-containing protein; Swiss-Prot: sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27; TrEMBL-Plants: tr|I1MR08|I1MR08_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1179966..1182466) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGTCTGATCAGGACATAGCAAAAGGGGTGGAGTTTCTACTCCGTCACTCTGACCCCAACTCCATAACAACAGTAAA CGGTGTCGTTCAGCAGTTGGAGGCTCAACTAGGGTTCGACCTTTCCCACAAAGCTGGTTTCATCAGAGACCAGATCGACC TTCTTCTCCGCTCACAACCACCGCCATTTCTTCCTCCTCCGCCACACAAAGACCATTTTCCCCTTAACCAACAACAACAA CAGCAACCCTACTTCCCAACCACCCAATCTCACCACCACTTTCCTCCCCATTTTGCCCTTCACTCCCATCATGAGATCAA CTTCCAGCAGCAGCACCACCACCCTCCTCCGCCACCGGCGAGTAAAGGCCACGTTGATGCACCCAAACAAAGGTGAGATT TATTTTCATGTTCCATTTTTGGAAACTGTTGATTCTTGTGTTTGTTTTGTTGTTTTATTTATTGAATTGGATTTGAAATT TTGTAGCTTTATTACTACCCACTTGTTAATGTCATGTCATTTTCGGTTTGATTATTTTTATCACGTTTCAACACATTTTT GTTTATTGGAATCCCCCAAAAATAGAAATTCTCTACCTTTTCAAACTATTCTCTTTTTGTTTGCTAGCATTCTCCTACTG CTATTGTCTTTTTTTTTTTGAAGTTCTACTGCTATTGTCGGATACTAGTTATTAATAATACTTATTTATTGACTAGGAAT GTTTTGGTTGAGAATTTTTGTCTAGTGTTATTTGTCATTTTTCACAATTTTAAAATGTGTTGTTTTAATTTGCCTAGTAG TCACACCTAAAATATGATTCAATTTCTGTGCCATGGTGTCCTGTTCTAATTAAGCTTTGAGTATGAGAGATTTTATGTAA TTTGTCTCTAATGAGAATGGTGTTGTCTATGTTATGGAATTAACTTATGAAATGTTGTGTTTGTACTCTTTAAATGATTT ACCAGTGTTGCTACTGGAGGCAAAAGAAGAGGCGGTGCAGGTGGTTTAAACAAAGTGTGTGGTGTTTCTCCTGAACTTCA GCCAATTGTTGGCGAGTCCGAGCTGCCAAGAACTGAGGTAGTTTTTTTTTTTCTCCTCATTCAACTAGGTTATCTGCCTT GCTATCATTGTTGAAGTATGAATTTTCGTTTTATCTGGAATGAACTGATAATTTTGAAAATGTCAATTCAGATTGTGAGA CAGCTTTGGGCATACATAAGGAAAAACAACCTCCAAGATCCTGGTAACAAAAGAAAGATAATCTGTGATGATGCTCTGCG TGTGGTGTTTGAGACAGACTGCACTGACATGTTCAAGATGAATAAGTTACTAGCTAAACACATTATCCCACTTGGGCCTA CAAGTAAGTCTGTGTTTGGATCAATGTTGTCACAGTTGATTTAGGATAATATTGATTTTGACGAAATTGATTATGGTAAA AGTGAGCTGAAAGCAACTGATTTTATGTTTGGCAACATTTATGAAAAGTGATTTTTGTTGAGTAATGTTGAGAAATCTAG TTTTAAAATTCACAGAATTGATTAAGTTCAATGCTGAAGTCACTTTCTCTAGCTTTTAGCAGATTTGATTTTGGCTCTGC TATTAATTATTGAAAATTACTCCCAGACATTTATATTGTCATCTAAAATTGATTTTACTCTATCAGAATTGGTTCTGAGG TCAAATAATAAAGGAGACTGTGTTACTTTATTTATTAGCATAGGTTTTTTTGATTTATTTGATTAATTATTTACTTAATA ATCGACCACTGTTGTCACCACAGAGGCGCCACAAGCTAAACAAATGAAGGTGGAGGCTGAATCTGCACTTGAAATGGCTG GACCTGCTTCACAAGCTAAACGAATGGTGGAAGCTGAATCTGCACTTGAAATGGCTGAACCTGCGCCACAAGCTAAACGA ACGAAGGTGGAAGCTGAATGTGCTCTTGAAATGGCTGAACCTGCACAACAAGCTAAAGGAACGAAGGTGGAAGCTGAGTA TGCACTTGAAATGGCTGAACCTGCTTCGTCTACTGTGACAATATCAGAAGCACTTGCCAAATTTTTGGGCACTGGGGAAA GGGAAATGCTACAATCTGAAGCCACAAGACTTGTTTGGGAGTACATCAAGCTCAATCATTTGGAGGTGTGTAGTCTTGTC CACAGCTTCTATATTATGATACTTATAAAATTGTCTTTTACTTGTAAATAACATCTCTTTGAGGTAAGCTGACAAAAAAC GATTTAATAAGAAGGTAGATTGTTTCTGCTTCTCATGTAGCAAGTTCTTTTCATTGAGCTTTTCATGGCTTCCATAATTG TTCTTTTGATGATCTACAATTGCTCTGTGATATTTGTAGGATCCTTTAAATGCAATGGTGATAGTATGTGATGCAAAGCT TCAGGAGCTACTTGGATGTGAAAGCATTTCAGTTTTAGGAATACCAGAGATGCTAGCACGTCATCATCTATTTAAAGTTT AAACAGTCCAACACCTGTTAA
CDS sequence (LotjaGi4g1v0008600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTGATCAGGACATAGCAAAAGGGGTGGAGTTTCTACTCCGTCACTCTGACCCCAACTCCATAACAACAGTAAA CGGTGTCGTTCAGCAGTTGGAGGCTCAACTAGGGTTCGACCTTTCCCACAAAGCTGGTTTCATCAGAGACCAGATCGACC TTCTTCTCCGCTCACAACCACCGCCATTTCTTCCTCCTCCGCCACACAAAGACCATTTTCCCCTTAACCAACAACAACAA CATGTTGCTACTGGAGGCAAAAGAAGAGGCGGTGCAGGTGGTTTAAACAAAGTGTGTGGTGTTTCTCCTGAACTTCAGCC AATTGTTGGCGAGTCCGAGCTGCCAAGAACTGAGATTGTGAGACAGCTTTGGGCATACATAAGGAAAAACAACCTCCAAG ATCCTGGTAACAAAAGAAAGATAATCTGTGATGATGCTCTGCGTGTGGTGTTTGAGACAGACTGCACTGACATGTTCAAG ATGAATAAGTTACTAGCTAAACACATTATCCCACTTGGGCCTACAAAGGCGCCACAAGCTAAACAAATGAAGGTGGAGGC TGAATCTGCACTTGAAATGCTTGAAATGGCTGAACCTGCTTCGTCTACTGTGACAATATCAGAAGCACTTGCCAAATTTT TGGGCACTGGGGAAAGGGAAATGCTACAATCTGAAGCCACAAGACTTGTTTGGGAGTACATCAAGCTCAATCATTTGGAG GATCCTTTAAATGCAATGGTGATAGTATGTGATGCAAAGCTTCAGGAGCTACTTGGATGTGAAAGCATTTCAGTTTTAGG AATACCAGAGATGCTAGCACGTCATCATCTATTTAAAGTTTAA
Protein sequence (LotjaGi4g1v0008600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSDQDIAKGVEFLLRHSDPNSITTVNGVVQQLEAQLGFDLSHKAGFIRDQIDLLLRSQPPPFLPPPPHKDHFPLNQQQQ HVATGGKRRGGAGGLNKVCGVSPELQPIVGESELPRTEIVRQLWAYIRKNNLQDPGNKRKIICDDALRVVFETDCTDMFK MNKLLAKHIIPLGPTKAPQAKQMKVEAESALEMLEMAEPASSTVTISEALAKFLGTGEREMLQSEATRLVWEYIKLNHLE DPLNAMVIVCDAKLQELLGCESISVLGIPEMLARHHLFKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 68 | 68 | 1.4E-129 | – | |
| PANTHER | 1 | 68 | 68 | 1.4E-129 | – | |
| Pfam | 2 | 56 | 55 | 1.7E-13 | ||
| SUPERFAMILY | 3 | 57 | 55 | 1.2E-5 | – | |
| PANTHER | 80 | 276 | 197 | 1.4E-129 | – | |
| PANTHER | 80 | 276 | 197 | 1.4E-129 | – | |
| Gene3D | 90 | 179 | 90 | 3.4E-29 | ||
| SUPERFAMILY | 90 | 172 | 83 | 1.46E-28 | ||
| SMART | 95 | 174 | 80 | 5.0E-45 | ||
| Pfam | 99 | 169 | 71 | 3.9E-27 | ||
| CDD | 99 | 169 | 71 | 2.79444E-38 | – | |
| Gene3D | 196 | 280 | 85 | 6.0E-20 | ||
| SMART | 200 | 279 | 80 | 1.6E-14 | ||
| SUPERFAMILY | 203 | 276 | 74 | 1.23E-17 | ||
| Pfam | 204 | 275 | 72 | 1.2E-18 | ||
| CDD | 204 | 275 | 72 | 5.11773E-20 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0008600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…