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Lj2g3v2538590.1

Overview

Field Value
Gene ID Lj2g3v2538590
Transcript ID Lj2g3v2538590.1
Lotus japonicus genome version MG20 v3.0
Description Upstream activation factor subunit UAF30 [Medicago truncatula] gi|357459823|ref|XP_003600192.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF08766
3 59 57 1.40E-09
IPR014876
Gene3D
G3DSA:1.10.10.60
4 61 58 1.20E-06
IPR009057
PANTHER
PTHR13844
5 95 91 1.50E-114 –
PANTHER
PTHR13844:SF14
5 95 91 1.50E-114 –
MobiDBLite
mobidb-lite
63 155 93 – –
PANTHER
PTHR13844
116 289 174 1.50E-114 –
PANTHER
PTHR13844:SF14
116 289 174 1.50E-114 –
Gene3D
G3DSA:1.10.245.10
144 233 90 6.70E-33
IPR003121
SUPERFAMILY
SSF47592
146 232 87 6.76E-27
IPR003121
SMART
SM00151
152 231 80 2.00E-42
IPR019835
Pfam
PF02201
155 226 72 6.20E-26
IPR003121
MobiDBLite
mobidb-lite
233 253 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj2g3v2538590.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2538590.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.