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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0793500 |
Transcript ID | LotjaGi1g1v0793500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA polymerase II transcriptional coactivator KELP; TAIR: AT4G00980.1 zinc knuckle (CCHC-type) family protein; Swiss-Prot: sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP; TrEMBL-Plants: tr|A0A151TXZ1|A0A151TXZ1_CAJCA RNA polymerase II transcriptional coactivator KELP; Found in the gene: LotjaGi1g1v0793500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136483191..136486753) extracted from Lotus japonicus Gifu genome v1.2.
CCATGGTCTAGTGGTCAGGACATTGGACTCTGAATCCAGTAACCCGAGTTCAAATCTCGGTGGAACCTCTTTTTTTATTT TTGTTTCTTACATATCAGGCTATCTATTCTCACGAAACCTCGACGAACAAAAAAACACATGATTTTTAAGATTTTCTTGA ATATAAAGGGAGTTCTTGGAGAAACTGCTCAGTTTCAACGTTAGGTTAGGTTTTTTTTGCAATGGAAGCCGAAACTCGAC GGAAAATCGAGGAAACTGTGTTGGATATACTCAAGAAATCCAATATCGAACAAACCACTGAGTTCACCATCCGAGTCGCT GCCTCCGACCAACTCGGCATCGACCTCTCCGCGCCGGAGACCAAGCAACTCGTTAGAAACGTCGTCGAGTCGTATCTTCT CACTGTCGCCGCCGCCGATGGTAAACCGCCGCAAGAAGAGTCTAGAGACGACGTGCAACCCAACAGGGAGATGAAGAAGG AGAAGGAGGATTCAGAACGCGTTATTTGCCAGGTGGGTAACTCCAAATTCAATTTGTGAACTACAGTCTTTGATATTGTT AAACTTTCAAATATATTCCTCTCTTAAGTCTTAATCATGGGCCTTAGTATGAATTGGTTGCTTGATCTAGCTATCAAACA GGAGGAATGTGGTGGTTCAAGATTTCAGAGGGACTACACTGGTGTCAATTAGGGAGTTCTATCATAAAGACGGAAAACAG CTCCCTGGTCCTAAAGGTCATTTACATTAATATATGCTTAGCATTCTAATGTGTGCTTTTCTCTTTTCTCTTATGGTCAT AGACCCTTTCACATGCCTTATTTCCTACCTTCATGTAGTGGTTTGTTATCTTGCAAGTGTTGCTGGAGTTTACTCTTAAG TACTAAACCCCATGCCATTATTAAAAAAAATTAACATGTTATTTTTCTTCTACTTATATGTTTACATAAATTCCCTTAAC ACTTGTTATTAATGAGTACATTTTAGGGACTTTATGTAACCTAGAATATTCTTAGTAAAGTAACATCCTTAATTGTGTTT TGGCTACTGACCGTGCTTAGTAATTTATGGTAAGGTAGTGTCATCATTATAATATGAAACCTGTGTTGTTTTTTATAGAC GTTGCTTATGCTTAAGTTGGAGTTTGTCTCTCTGAATTCTGAGATGAATTTTGTCTCTCTTCAAATATATGTGGCTGTGT TTTGTTGAGACTTCATTACTCTGAACTCCGAAACTAAAGGCATCCCTTCTCTGTACTGCTGATTTTAGGGATAAGTTTAT CTACTGAACAATGGTCAACCTTCAAGAACAGTGTTCCCGCCATAGAGGAAGCTATCAGGAAGATGGAAGGAAGGATAAGG TGAGCATTCAATGTTGATTTATGAGTTCTTTGATTACATGAAAATTTCTGAATTCATAATGATATTGATCAGTTAAGTGT CCAAATGTGGTTGTGAGGAATCCTCTACATACAGAACACGGAATCTTGTTTCTGTTCAACCCTGCATATTGATGATTTGC TAACTGCATACGATATGATACTTTGTAGTTTAGTTGGAAGGTTTTCTGCACTCTTATGAATATTTAGTATTTACTTTCTG GATGAAAATGAAACATGTTTGTAGTCTGTTAATTATACTCAAGTGCATGGTAAAAAGTTGTTTTTGAACAGTATAGATTG TATCTGTAGACTGGCCTAACCTGCAGCATATAATCATCACAATGTAGACCAGAGCTTAATGGTGAGAAAAATGGAGATGC AGCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCTTGTCCCTATCGAGATCATCCGGTTTGACGGGAGGAATTACCAAT TTTGGGCTCAACAGATGGAATTACTCTTGAAACAGTTAAAGATTCACCATGTGCTTGTGGAACTATGCCCAAATGCTACA TTACGAGAAGATGCAAGTGGTGAAGAAATTGCACAAGCCAAAGCTGCTGAAAAGAGATGGGTAAATGATGACCTAATGTG TCGTCGCAACATCTTGAGCCACTTATCTGATCATCTTTTCAATCAGTATGTGAACAGAAAAATGAGCGCGAAGGAGTTAT GGGAAGAGTTAGATTTGGTTTATCGGTATGAGGAATATGGAACAAAGAGATCTCAGGTGAAAAGGTATATTGAATTTCAG ATGGTTGATGAGAAAGCGGTTGTTGACCAAATTCGAGAATTGAATAGCATTGCAGATTCTATTGTTGCTGCTGGAATCTC TATTGAAGAGAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCGTCCTGGAAAGGATTCAGCATCAAGTTAATGC GTGAGGAGTATCTACCTTTCTGGAATTTAATGGAACATATAAGAATAGAAGAAGAATCTCGCAATGGAGTCAAACATGTG GGTGAACATTTTAATAGTGTAAGATATCATCAGGCCAATACAAGTGGACACAGGGCTGCTGACAATAGGCCACATGGTAT GTATAGGAATAAGTTAGAACAAAATACCAAGGGCATAGCCTGTAATGTTTGTGGCAAGAAGGGGCATCTTTCTAAATACT GCTGGAGAAGATGTGAGAAGCAAGCCAATGAAAGGAAAGCAGTGGAGGATGATATGCGAATACCTACAGCTGGTAATACG CCTGGGGTTGAGTAACTTATCCTTTATTCTTTTAAGGTCTTGAGTATTCTTCATGAAGAGAATGTGAAGAGTCTTGTAGA CATGTACAATTATGTTTGCTTCCACATTCACAATAGTCAGAATCACATAAGGTATAATAGTATGTTTGAATCAGCTTCCT TCTCCTAAGAATCAATTATAGGAACCAGAAGCTTCTCTCTAGAATTGATTTTGACTTTAGATTGAAATGGAGAAGGATTT TTGAACATGCACTCAGTCATCCCCTAGAGCTGCTTTTGACATCTTGTGAATTTTGTCCTATGGCGCCAATCCAAACACTG TTCTTCCCTAGCTACCTTTGTTGGGCATAACCATAACACCTTTTCTAATTAGGCTAGGTTTTCATGGTCCATTTTTGTGT AAGTAAATGTCCATATCCTTGGTGAATTTAATTTGTGCCTTTTAACCTCCTGGCTGATTGATTTATAACAACAGTTGTAA ATTGCGCTATAAAGCAACTGTACTTGGGCTCTGTTTGTCAATATCAGCTTAATTTTATGCAGTGATTCAATGGAGCAGAA CCAGATAGTTTTCCTGGAGGAAGTGAAATATTTGAAAAATGTTGTCAGAGCAAATTCAGGACTTAGTTGAAAGTGATTCC TAGAGATTGATGTTGTTTTCTTGTGAAATCTTGCCAATTGATCTATTATCTATTTATAATAGATTAAAACTGAAGTGCAT TTATGGCGAAGAAATATATGTCACTCAATTAGCATGCATGCTCGCAAGTAAAGCATTTTATTATGGTGTTGTGTTATGTT TCAAATCAAGAGTTCTACCTTTTATTTTCTTTTTACTCAACATATTGTTTATTATCTTTCCTAGCTTCAATTATTCAATT AAATGTTTTAGTGATTTGGTTCTTTTTAATGACTTAAATAAAT
CDS sequence (LotjaGi1g1v0793500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCGAAACTCGACGGAAAATCGAGGAAACTGTGTTGGATATACTCAAGAAATCCAATATCGAACAAACCACTGA GTTCACCATCCGAGTCGCTGCCTCCGACCAACTCGGCATCGACCTCTCCGCGCCGGAGACCAAGCAACTCGTTAGAAACG TCGTCGAGTCGTATCTTCTCACTGTCGCCGCCGCCGATGGTAAACCGCCGCAAGAAGAGTCTAGAGACGACGTGCAACCC AACAGGGAGATGAAGAAGGAGAAGGAGGATTCAGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTTCA AGATTTCAGAGGGACTACACTGGTGTCAATTAGGGAGTTCTATCATAAAGACGGAAAACAGCTCCCTGGTCCTAAAGGGA TAAGTTTATCTACTGAACAATGGTCAACCTTCAAGAACAGTGTTCCCGCCATAGAGGAAGCTATCAGGAAGATGGAAGGA AGGATAAGACCAGAGCTTAATGGTGAGAAAAATGGAGATGCAGCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCTTGT CCCTATCGAGATCATCCGGTTTGACGGGAGGAATTACCAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGTTAA AGATTCACCATGTGCTTGTGGAACTATGCCCAAATGCTACATTACGAGAAGATGCAAGTGGTGAAGAAATTGCACAAGCC AAAGCTGCTGAAAAGAGATGGGTAAATGATGACCTAATGTGTCGTCGCAACATCTTGAGCCACTTATCTGATCATCTTTT CAATCAGTATGTGAACAGAAAAATGAGCGCGAAGGAGTTATGGGAAGAGTTAGATTTGGTTTATCGGTATGAGGAATATG GAACAAAGAGATCTCAGGTGAAAAGGTATATTGAATTTCAGATGGTTGATGAGAAAGCGGTTGTTGACCAAATTCGAGAA TTGAATAGCATTGCAGATTCTATTGTTGCTGCTGGAATCTCTATTGAAGAGAACTTTCATGTTAGTGTCATCATTTCAAA GCTTCCACCGTCCTGGAAAGGATTCAGCATCAAGTTAATGCGTGAGGAGTATCTACCTTTCTGGAATTTAATGGAACATA TAAGAATAGAAGAAGAATCTCGCAATGGAGTCAAACATGTGGGTGAACATTTTAATAGTGTAAGATATCATCAGGCCAAT ACAAGTGGACACAGGGCTGCTGACAATAGGCCACATGGTATGTATAGGAATAAGTTAGAACAAAATACCAAGGGCATAGC CTGTAATGTTTGTGGCAAGAAGGGGCATCTTTCTAAATACTGCTGGAGAAGATGTGAGAAGCAAGCCAATGAAAGGAAAG CAGTGGAGGATGATATGCGAATACCTACAGCTGGTAATACGCCTGGGGTTGAGTAA
Protein sequence (LotjaGi1g1v0793500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAETRRKIEETVLDILKKSNIEQTTEFTIRVAASDQLGIDLSAPETKQLVRNVVESYLLTVAAADGKPPQEESRDDVQP NREMKKEKEDSERVICQLSNRRNVVVQDFRGTTLVSIREFYHKDGKQLPGPKGISLSTEQWSTFKNSVPAIEEAIRKMEG RIRPELNGEKNGDAANSVVDVAPLELVPIEIIRFDGRNYQFWAQQMELLLKQLKIHHVLVELCPNATLREDASGEEIAQA KAAEKRWVNDDLMCRRNILSHLSDHLFNQYVNRKMSAKELWEELDLVYRYEEYGTKRSQVKRYIEFQMVDEKAVVDQIRE LNSIADSIVAAGISIEENFHVSVIISKLPPSWKGFSIKLMREEYLPFWNLMEHIRIEEESRNGVKHVGEHFNSVRYHQAN TSGHRAADNRPHGMYRNKLEQNTKGIACNVCGKKGHLSKYCWRRCEKQANERKAVEDDMRIPTAGNTPGVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 453 | 450 | 2.0E-183 | – | |
PANTHER | 4 | 453 | 450 | 2.0E-183 | – | |
Pfam | 5 | 59 | 55 | 2.3E-8 | ||
MobiDBLite | 65 | 91 | 27 | - | – | |
MobiDBLite | 69 | 91 | 23 | - | – | |
Gene3D | 85 | 163 | 79 | 1.2E-25 | ||
SUPERFAMILY | 95 | 157 | 63 | 1.18E-18 | ||
Pfam | 96 | 146 | 51 | 3.7E-20 | ||
Pfam | 247 | 382 | 136 | 3.1E-15 | – | |
ProSiteProfiles | 428 | 441 | 14 | 8.713 | ||
MobiDBLite | 452 | 471 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0793500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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