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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0793500 |
| Transcript ID | LotjaGi1g1v0793500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II transcriptional coactivator KELP; TAIR: AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP); Swiss-Prot: sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP; TrEMBL-Plants: tr|A0A151TXZ1|A0A151TXZ1_CAJCA RNA polymerase II transcriptional coactivator KELP; Found in the gene: LotjaGi1g1v0793500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136483391..136486582) extracted from Lotus japonicus Gifu genome v1.2.
TTAGGTTAGGTTTTTTTTGCAATGGAAGCCGAAACTCGACGGAAAATCGAGGAAACTGTGTTGGATATACTCAAGAAATC CAATATCGAACAAACCACTGAGTTCACCATCCGAGTCGCTGCCTCCGACCAACTCGGCATCGACCTCTCCGCGCCGGAGA CCAAGCAACTCGTTAGAAACGTCGTCGAGTCGTATCTTCTCACTGTCGCCGCCGCCGATGGTAAACCGCCGCAAGAAGAG TCTAGAGACGACGTGCAACCCAACAGGGAGATGAAGAAGGAGAAGGAGGATTCAGAACGCGTTATTTGCCAGGTGGGTAA CTCCAAATTCAATTTGTGAACTACAGTCTTTGATATTGTTAAACTTTCAAATATATTCCTCTCTTAAGTCTTAATCATGG GCCTTAGTATGAATTGGTTGCTTGATCTAGCTATCAAACAGGAGGAATGTGGTGGTTCAAGATTTCAGAGGGACTACACT GGTGTCAATTAGGGAGTTCTATCATAAAGACGGAAAACAGCTCCCTGGTCCTAAAGGTCATTTACATTAATATATGCTTA GCATTCTAATGTGTGCTTTTCTCTTTTCTCTTATGGTCATAGACCCTTTCACATGCCTTATTTCCTACCTTCATGTAGTG GTTTGTTATCTTGCAAGTGTTGCTGGAGTTTACTCTTAAGTACTAAACCCCATGCCATTATTAAAAAAAATTAACATGTT ATTTTTCTTCTACTTATATGTTTACATAAATTCCCTTAACACTTGTTATTAATGAGTACATTTTAGGGACTTTATGTAAC CTAGAATATTCTTAGTAAAGTAACATCCTTAATTGTGTTTTGGCTACTGACCGTGCTTAGTAATTTATGGTAAGGTAGTG TCATCATTATAATATGAAACCTGTGTTGTTTTTTATAGACGTTGCTTATGCTTAAGTTGGAGTTTGTCTCTCTGAATTCT GAGATGAATTTTGTCTCTCTTCAAATATATGTGGCTGTGTTTTGTTGAGACTTCATTACTCTGAACTCCGAAACTAAAGG CATCCCTTCTCTGTACTGCTGATTTTAGGGATAAGTTTATCTACTGAACAATGGTCAACCTTCAAGAACAGTGTTCCCGC CATAGAGGAAGCTATCAGGAAGATGGAAGGAAGGATAAGGTGAGCATTCAATGTTGATTTATGAGTTCTTTGATTACATG AAAATTTCTGAATTCATAATGATATTGATCAGTTAAGTGTCCAAATGTGGTTGTGAGGAATCCTCTACATACAGAACACG GAATCTTGTTTCTGTTCAACCCTGCATATTGATGATTTGCTAACTGCATACGATATGATACTTTGTAGTTTAGTTGGAAG GTTTTCTGCACTCTTATGAATATTTAGTATTTACTTTCTGGATGAAAATGAAACATGTTTGTAGTCTGTTAATTATACTC AAGTGCATGGTAAAAAGTTGTTTTTGAACAGTATAGATTGTATCTGTAGACTGGCCTAACCTGCAGCATATAATCATCAC AATGTAGACCAGAGCTTAATGGTGAGAAAAATGGAGATGCAGCAAATTCAGTTGTTGATGTTGCTCCTCTTGAGCTTGTC CCTATCGAGATCATCCGGTTTGACGGGAGGAATTACCAATTTTGGGCTCAACAGATGGAATTACTCTTGAAACAGTTAAA GATTCACCATGTGCTTGTGGAACTATGCCCAAATGCTACATTACGAGAAGATGCAAGTGGTGAAGAAATTGCACAAGCCA AAGCTGCTGAAAAGAGATGGGTAAATGATGACCTAATGTGTCGTCGCAACATCTTGAGCCACTTATCTGATCATCTTTTC AATCAGTATGTGAACAGAAAAATGAGCGCGAAGGAGTTATGGGAAGAGTTAGATTTGGTTTATCGGTATGAGGAATATGG AACAAAGAGATCTCAGGTGAAAAGGTATATTGAATTTCAGATGGTTGATGAGAAAGCGGTTGTTGACCAAATTCGAGAAT TGAATAGCATTGCAGATTCTATTGTTGCTGCTGGAATCTCTATTGAAGAGAACTTTCATGTTAGTGTCATCATTTCAAAG CTTCCACCGTCCTGGAAAGGATTCAGCATCAAGTTAATGCGTGAGGAGTATCTACCTTTCTGGAATTTAATGGAACATAT AAGAATAGAAGAAGAATCTCGCAATGGAGTCAAACATGTGGGTGAACATTTTAATAGTGTAAGATATCATCAGGCCAATA CAAGTGGACACAGGGCTGCTGACAATAGGCCACATGGTATGTATAGGAATAAGTTAGAACAAAATACCAAGGGCATAGCC TGTAATGTTTGTGGCAAGAAGGGGCATCTTTCTAAATACTGCTGGAGAAGATGTGAGAAGCAAGCCAATGAAAGGAAAGC AGTGGAGGATGATATGCGAATACCTACAGCTGGTAATACGCCTGGGGTTGAGTAACTTATCCTTTATTCTTTTAAGGTCT TGAGTATTCTTCATGAAGAGAATGTGAAGAGTCTTGTAGACATGTACAATTATGTTTGCTTCCACATTCACAATAGTCAG AATCACATAAGGTATAATAGTATGTTTGAATCAGCTTCCTTCTCCTAAGAATCAATTATAGGAACCAGAAGCTTCTCTCT AGAATTGATTTTGACTTTAGATTGAAATGGAGAAGGATTTTTGAACATGCACTCAGTCATCCCCTAGAGCTGCTTTTGAC ATCTTGTGAATTTTGTCCTATGGCGCCAATCCAAACACTGTTCTTCCCTAGCTACCTTTGTTGGGCATAACCATAACACC TTTTCTAATTAGGCTAGGTTTTCATGGTCCATTTTTGTGTAAGTAAATGTCCATATCCTTGGTGAATTTAATTTGTGCCT TTTAACCTCCTGGCTGATTGATTTATAACAACAGTTGTAAATTGCGCTATAAAGCAACTGTACTTGGGCTCTGTTTGTCA ATATCAGCTTAATTTTATGCAGTGATTCAATGGAGCAGAACCAGATAGTTTTCCTGGAGGAAGTGAAATATTTGAAAAAT GTTGTCAGAGCAAATTCAGGACTTAGTTGAAAGTGATTCCTAGAGATTGATGTTGTTTTCTTGTGAAATCTTGCCAATTG ATCTATTATCTATTTATAATAGATTAAAACTGAAGTGCATTTATGGCGAAGAAATATATGTCACTCAATTAG
CDS sequence (LotjaGi1g1v0793500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCGAAACTCGACGGAAAATCGAGGAAACTGTGTTGGATATACTCAAGAAATCCAATATCGAACAAACCACTGA GTTCACCATCCGAGTCGCTGCCTCCGACCAACTCGGCATCGACCTCTCCGCGCCGGAGACCAAGCAACTCGTTAGAAACG TCGTCGAGTCGTATCTTCTCACTGTCGCCGCCGCCGATGGTAAACCGCCGCAAGAAGAGTCTAGAGACGACGTGCAACCC AACAGGGAGATGAAGAAGGAGAAGGAGGATTCAGAACGCGTTATTTGCCAGCTATCAAACAGGAGGAATGTGGTGGTTCA AGATTTCAGAGGGACTACACTGGTGTCAATTAGGGAGTTCTATCATAAAGACGGAAAACAGCTCCCTGGTCCTAAAGGGA TAAGTTTATCTACTGAACAATGGTCAACCTTCAAGAACAGTGTTCCCGCCATAGAGGAAGCTATCAGGAAGATGGAAGGA AGGATAAGGTGA
Protein sequence (LotjaGi1g1v0793500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAETRRKIEETVLDILKKSNIEQTTEFTIRVAASDQLGIDLSAPETKQLVRNVVESYLLTVAAADGKPPQEESRDDVQP NREMKKEKEDSERVICQLSNRRNVVVQDFRGTTLVSIREFYHKDGKQLPGPKGISLSTEQWSTFKNSVPAIEEAIRKMEG RIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 162 | 162 | 1.5E-48 | ||
| PANTHER | 3 | 161 | 159 | 1.5E-66 | – | |
| PANTHER | 3 | 161 | 159 | 1.5E-66 | – | |
| Pfam | 5 | 59 | 55 | 3.9E-9 | ||
| MobiDBLite | 65 | 92 | 28 | - | – | |
| MobiDBLite | 69 | 92 | 24 | - | – | |
| Gene3D | 85 | 163 | 79 | 1.6E-26 | ||
| SUPERFAMILY | 95 | 157 | 63 | 1.73E-19 | ||
| Pfam | 96 | 146 | 51 | 6.5E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0793500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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