Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0385200 |
| Transcript ID | LotjaGi2g1v0385200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | D-2-hydroxyglutarate dehydrogenase, mitochondrial; TAIR: AT4G36400.1 FAD-linked oxidases family protein; Swiss-Prot: sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial; TrEMBL-Plants: tr|G7KGB4|G7KGB4_MEDTR D-2-hydroxyglutarate dehydrogenase; Found in the gene: LotjaGi2g1v0385200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88139507..88146463) extracted from Lotus japonicus Gifu genome v1.2.
GAATAGTGACAATATGTGACTCATCAGTCATGGAAAGATAAAGATGTCCCAATTTAATGTAGTATTTACTATTTAGTAAT TGGTGGGACAGACATATAGTTACGGTTTCTCATTAGTTGAATTAACCCAAGCAAGCAAAAGGTTAAGCAAGCTGATCACT AGCACAGAAGCACCAGCTGAGAACGAAGGATGATGAATCGGAACACCAGAGCCACACTTCGCTTACTCACCCCATTCTTC AATCCCCGACGCAACCCATCTCTTCTCCCTTCAACACCTCATTTCGATGAAAACTGGTGGCACTCACAGACCAACATTGC CCACGGGGAGCATAGAGTTTCTTCACTCTTCAACCCGTTAAGATTTTCAGTGAAAAATCAGCAAATGGGTGTTGGAATTT CAACCGGAATCCAGCATAAATGCTATGCTTCAATGCCTGGGTTGGTTCAGAGGAACCCCAGATTCTCAGAATTGAATGAT GATGATGTTAGATACTTCCAGGAGATACTGGGTCAAAAAAATGTTGTGCAGGATGAGGAGAAGCTCAGCACTGTAAACAC TGATTGGATGCATAAGTACAAAGGCTCTAGTAAGCTCCTGCTACAACCTTGGAACACTGATCAGGTTCTGTCTTTTATCT GTTTTATTTTTTCTTACCTTTCTTTTACTTCTATTGCATGCATGTAATAAGCAATTATGCATTACCCCTTTAGAACATTG ATTCTGTGTTTTCTTTGTTGATTTGTTTTCAAGAGTATTTCTGTTTGCAGGTTTCTCAGATTCTTAAATACTGTAACTCC AGAAGCCTGGCTGTTGTTCCTCAGGGTGGAAACACTGGTCTTGTAGGTGGAAGTGTACCTGTCTTTGATGAAGTATGTCT CTTCTTCATTCACTCTCTGTCATGATAAGGGTTCAATCTTACAAAAAAGCCCAATTTTTACTGTGAGCTTAAATGCTGTT TTTGCATGTTGTATTTTGACTACTTTCTTACAATCTGATGCTGCAGGTGATTGTTAGTCTTAGTTCTATGAATAAGATCA TATCTTTCGACAAGGTAGGCTATCTACTTCTTGAAAGGCATATTTTTTATGAGCTCCCTCCTTCCTCTGTGTGTTTGTGT TGGATGGTTTTGGTAGGAACTTCTGTACTTTATTGAGCACTGAGTAGCATTTTCTTTAAAAAAAAAGCTACTTTTATATC AATTTATCATCTGATCAATGTTTTTCTTTCCTACAGTCTTTTATTTTTCTAAAAAGTAAATTAAATATTGCATTAGCTTA TTTTGTGTTCACAATAGGTTTATAATCAACATGCTTCAGATAGAGCTTATGGCTAGAAAGTTGTGTCTGTAAAATAAAGT AATACTATGCGGAGTGTGGACCACAATGCTCAAACATCCACAAGCAACTCACCTTAACACAGCTTTTTAATGTCATATAA CCAAACAACATCTGATTCCACCAGTGACCTTAAAACACCAGATTGCATCAAATTTATTATAGGATTCGTTTCAATTGAAT TAACTTCAGTGTCAGACATTGGAGTGACAGATTTCAATACTTAGTGCTGAAGTTCCTGCCAATGTCTTTCGTAGGTTAGT GGAATATTGGTTTGTGAAGCTGGATGCATACTGGAAAATATAATATCATTCCTGGACAATGAAGGGTAATCTTTTTCACT TTATAAAGACGTTATAGTTTGTAATTCTTATAGATCAATTTCATAGAACCATAACTGGATGAATATTTTCTTTGGGCAAT CTGATGCTAGCTACTTTTGAAAGAAGAATTTACAATACTACCAAACTTGCTACTTCCATATTTTTAACTAATAATTCCAA AATGGGATTATGTTGGTCCTTTGCTTGATGAAATTATGGCGGTAGTGGAAAAATGATTTTTCATTTGGTTTGTTCTTTTC TCAAAGTTCTATGTAGTGATAGTGCAGTGACATAACTTAGGTCTTGAAATTTTTAGATGATCGGTTCCCCTTTCTTCAAC CATTTGAGTTTTACTCATAGCCTTGAGGTGTACTTTCTGTATTTTAATTGTCTACACTGTTCATACAGATTTATTATGCC ACTAGACTTGGGTGCTAAGGGGAGTTGCCAGATTGGTGGAAATGTTTCAACCAATGCTGGTGGTTTGCGTCTTGTTCGTT ATGGATCTCTTCATGGAAGTGTGCTTGGTAAGAGAATACTTTAACCCATAAAACCTTAACTGTTTAAACAGGTTGAGTCT GATTGACTTTTACCTGTGTAGTTATATCATCTAAATTTAATACTTCCAAAGTCAATGCACCAATGCTAGATGATTTAGTG ATTTCTATAATTGAGTCCAATTGTTAGGTAGAATCATCTTCATATCAGAGTATAAACCACTGGGATTGTTTAAGACATTG CAAACTTAGTGGCATAATTGATCCACTTTCCTTTTGGCTCTGCTAAATTTATTCTGAAGCAAGATTCTGATTGTTTGGCA GGAGTTGAAGCTGTTTTAGCAGATGGTACTGTACTTGACATGCTTAAGACGTTGCGCAAAGATAATACTGGCTATGACTT GAAACATCTATTTATAGGTTTGTAGTTAACAGTTGATAATAATGCAAAACTGGAAACTAATAGATAATGTGATTGTAACT TAACTTCCCAATGATGTAGGAAGTGAAGGTTCCTTGGGAATTGTTACTAAGGTTGCAATACTAACCCCACCAAAGTTATC TTCAGTAAACGTGGCTCTTCTTGCTTGCAAAGATTATAACTGCTGCCAGGCATGATTAATGTTCTTACTTAGAATTTACT TTGCGAAGTCAATTTGTAAAACTAGTCATAGTTTATTCTGGTTGTTGCACTGGTCTCTTTTTTGTAATTTCTATGTGTGA GTTCAATTGATTGCCCTTTATGAATTTGGTAATTTTATGCTGAGAGATTTGGAAGCAATGTACGTGTTCTTTTTTCTTTA CCGTGTATGTTTTCATTTTTGTTTATGTGGATCCTTGAGTTCTAATTTTATTTTAATTTTCTTATTATCATCTTATAAGG TGTAGACACATATAACATAGGTACAATGATGAAGAACTGTGAACCTGAATACAAAAGGACTCTCACACAAACCTCTCTGT ATTTTATAGGGAACACATATAATAAATTTATGAAAACATAACTGGTCGCATTTCTGAAGAAAAGGAATACAATATATATA AGGATTTACTTAGATCATCAATTATTTTGTTTTAAAGAAAAACATATCCACCACCTTTGAATAAGGAAAATGAAAATGGA TCTCTAATGACAAGATAATAGGAGCTAATGAGAACATATTAACTTCAAGTTACAAAGTAGGGGAAATTCTTGTATATAAG TTGACCTATTGTATTCATTTTTGTTTGTCAAACTTTGACAATTTATACTGCTAACTGAAAATGTAAAAGTTTATGAAATT TTGTATGTTCATGTTTTGTTGTGCTGTGTGGTCTTATGGTTTATGTTTACCTTTTACTAGAAAAAGTTTATTCCAATAAG CTTTGCCCCTTTTGTTTGTGAGAATAAAACAGGCATAAATCTTATTAGATTTCTTGTGTTTCTATACTGCTTAACAGAAG CTACTACAGGAAGCAAAAAGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTTTAGACAGCCAGTCAATGAATTTGGT AATCTCTAGTGATACTTTGTGATGTAATTAATTTTTTAATTGTTACTTACATGCATTGAAGTTATCTTGGCTCATAAGCA TCTGTTAAAACTTGATCTAAATGCTGCCATTGCCTCCAGTCTAGGACTATGGAGCTCTGGACTTTGATCTCTGATTTTGA AAGGACCTACATAATGTTCTCTTCCTTGTCATAAAATTTGTGAGAATCATACTGGTCTGATTGGTTTCTGAGCAGGTTAT AAATCACCTTGAAGGTGCTCGGAATCCATTACCTACACTGCATGACTTTTATGTTTTGATTGAGACAACTGGAAGTGATG AATCTTCTGACAAGTAAATTTCTTGCCATTTTATCTTGATTTACGTTGTTCATTTTTGTACAGTAAATTACATTGGCCTC ACCTGCTATGGATTTTAATCAATCAAATACCCCCTATTTAAATCGTATGTTAGACAATTCTCAACAGATATTAGTGTAAA CTTCCATGTTAATGGACTTATTCAGTGCTGAATTTTGTCACTACTAATCTCAGGCCTCTACTGGCCTTAATGAACTGGCA CCTGCTACTTGCAGGGTCTGGCCACTTATAGATAACAGGTATAGGAGAGTTTCTTTATATATCTTGTCCTCCACAATTTC ATCTTAAAATATCCTATGTTTATCGAAATGAAAATTTTATGCCATGAACCTAAATATATGCCTGAACACATTTGTTTATC CTTAATATGTGTAATTTTGTTTTAGTTGTCAACATTGATCATGTAATTAAGGTCCTTCATATTTGATATCTCATTTGATT TTCATATCACCAGACAAAAGCTTGAAGCATTTCTACTTCACTCAATGGAAAATGAATTGATATCTGATGGTGTTCTTGCC CAAGACATAAACCAAGCATCATCCTTTTGGCGTCTACGTGAGGTTGACATATTCTGTTCCATGACTCTCCTTTTTGGAGG AATACTCTATGCTTTTCAACATTAAGGATATATCTCTGTTGTGCTTAAGCTTTTAATATTTTAGTGGTTTCGCTTCTCTG AGCTGGTTTTCTGATTTTTTTTAGTCAGTATTTGACTATTTTCTCCTCTTCTGAATTCATGCTTCATTTCCTAAATCAAC TAGCTTCACCAAGTTAGATCATCTGTACACTTTGGATTTGGAAATTGCATACCGGTGTCATGTAGAAGTTATTGTTACCA GTGTGCATGACTCCATATCCGCTTGCAATCTTGCATGCCAAATAAGGCTCTTTACCAGCTATATCATCCTTAGAGCAGAT TTCAATTTAAACTTTACATATGGTTTTATACTTTTACAGTTTTACTCTTCAACTAATATGAACTTCCTGCTAAATTAGAC ATTCTTTTTCTTCATTTTTTCTGGGCTACGTTGCTCATAATTATTTTGATATCAGTAAGCACTTGTGGATGCTTTTCAGT ATAGACCCTTCTTTGCTTGTTTGACATATATTTATTCTCAGTTTATTGAAATGGACAAAATTAACTAGATTTGTGAACGT ATTGAGTGGCTGAAATTCATAAGGATCTAAACGGAACTTTTTTTCCTCAAAAGTTTTATTTCTTCTGTTTGCTTTACAGC AACGGTTTGTCATTGGTGACTAGAATTTCAATTTATAATGAAATCCTTAATTGTTCTTCAATGAAAATATTTTTGTAGAA TTCAGTTATATTAAATGTTATTTACTGGTTTCAGGGTATAACCGAGGCATTGATGAGAGTAGGAGCAGTTTACAAATATG ATTTATCAATACCTCTTGAAAATCTGTACAATCTTGTCGAAGAAATGCGCTCTAGACTAGGTAAGAAACAGAATACTGTT ACCATTTGTTGTCATATTTTCAGTTCCCTCTGTTGGTGTATTGTTCAGATACAATCTGATAGGATGAACAGTGCGCATGA ACAGTAGCAGTTAGAAAGTTATTATTTAATTATTTGTTGGGGTAGTTATTGGGTTAGTTATTTACATAAGTTTATGTTAG TTATGTTCTATCAAAACTGCCTAGGGGTGGTTATTAAATTTCTAGTTATAAATAGAAGTTGTGGCTGTTATTTTAGACAT TCAGAAATTGGGTGGTTGTCTTAGGGAGAGACTGGACTCTCAAAATTCTAGAATTTGTAGGAGAAAACTGGCTCTCGAAC ACCAGTACTTCCATAAATATTCTGTAATAAATTCGGTTCCTATCACAATCATAATGGATGAGATTTAATTGTGTCCTAGA ATCCTGTGTATACTCTCTTAGCCTTTTATTATGTAAAATATGTTATCAGTTGTATTGTATCACAATGGTGCATACTAGAC CATGATTATTAATTTTTTTTAATTACAGGTAATGCTGCTAATGTAGTTGGATATGGTCACCTTGGAGATGGTAATTTGCA TTTAAATATTTCTGTGCCTCAGTATGATGACAAGGTAGCTCAAGCAAACTCAAAAGAACTACTTGGTTATGAAATTACTC TTTGCATTTTATAAGTCTATAGCTGTTAAATTTTGCAGATTTTATCGCAAATTGAGCCTTTCGTGTACGAATGGACATCT AAACACAATGGCAGTATTAGCGCAGAGCATGGCCTGGGATTAATGAAAGCTAACGAGATTTTGTATAGCAAGTCACTGGA AACGGTAAGTATATTGTGGACTCAAGCTGCAGTTCCTTCTATTTGAAAATGTGAACTTGTGAATTGAATGTCTAAACCAT TTTGGAATTGTGCAGGTGCAACTAATGGCTTCCATCAAGAGTTTGCTGGATCCCAATCACATACTCAACCCATATAAAGT TCTTCCTCACTCTCTCAATGCATAATTTGCTGGATCCCAATCTCATTGCATATAAATTTTGTTTTTGTATTGTGCTCACT TCTTTAAAGTGAGAGGTAATGTTATTTCTTTCAGTATATACACACCGGATTTCTCTGTCCCTGGTAGTGTAGTGCACTAT TGCCTCCCTCCTACAAGAGATTGAGAAACGCAATAGGAGACAAGTGTTTGGTACCAAATCATAGTTTAGTGTACTTACTG CTACATCTTAAATAAGTATTTGTGTACTAAGCTCGTGTCCATCTTTCATAATGTCTGTTGTTGCTATTAAAAAATTTCTT AGCCTATGCAACATTGCATAAGGTAAAGATACGAAGTGGAAAGTTTTTATTAAAAATGAAAGCATATGATAAGAATAAAG TACGAATTTAACCAATACCTTCCTCTGCTCAGCTTGCTGATTTACACACCAAAGCTTTGCTTTCCTCTTCCTTTAAC
CDS sequence (LotjaGi2g1v0385200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAATCGGAACACCAGAGCCACACTTCGCTTACTCACCCCATTCTTCAATCCCCGACGCAACCCATCTCTTCTCCC TTCAACACCTCATTTCGATGAAAACTGGTGGCACTCACAGACCAACATTGCCCACGGGGAGCATAGAGTTTCTTCACTCT TCAACCCGTTAAGATTTTCAGTGAAAAATCAGCAAATGGGTGTTGGAATTTCAACCGGAATCCAGCATAAATGCTATGCT TCAATGCCTGGGTTGGTTCAGAGGAACCCCAGATTCTCAGAATTGAATGATGATGATGTTAGATACTTCCAGGAGATACT GGGTCAAAAAAATGTTGTGCAGGATGAGGAGAAGCTCAGCACTGTAAACACTGATTGGATGCATAAGTACAAAGGCTCTA GTAAGCTCCTGCTACAACCTTGGAACACTGATCAGGTTTCTCAGATTCTTAAATACTGTAACTCCAGAAGCCTGGCTGTT GTTCCTCAGGGTGGAAACACTGGTCTTGTAGGTGGAAGTGTACCTGTCTTTGATGAAGTGATTGTTAGTCTTAGTTCTAT GAATAAGATCATATCTTTCGACAAGGTTAGTGGAATATTGGTTTGTGAAGCTGGATGCATACTGGAAAATATAATATCAT TCCTGGACAATGAAGGATTTATTATGCCACTAGACTTGGGTGCTAAGGGGAGTTGCCAGATTGGTGGAAATGTTTCAACC AATGCTGGTGGTTTGCGTCTTGTTCGTTATGGATCTCTTCATGGAAGTGTGCTTGGAGTTGAAGCTGTTTTAGCAGATGG TACTGTACTTGACATGCTTAAGACGTTGCGCAAAGATAATACTGGCTATGACTTGAAACATCTATTTATAGGAAGTGAAG GTTCCTTGGGAATTGTTACTAAGGTTGCAATACTAACCCCACCAAAGTTATCTTCAGTAAACGTGGCTCTTCTTGCTTGC AAAGATTATAACTGCTGCCAGAAGCTACTACAGGAAGCAAAAAGGAAACTTGGGGAGATTTTATCTGCATTTGAATTTTT AGACAGCCAGTCAATGAATTTGGTTATAAATCACCTTGAAGGTGCTCGGAATCCATTACCTACACTGCATGACTTTTATG TTTTGATTGAGACAACTGGAAGTGATGAATCTTCTGACAAACAAAAGCTTGAAGCATTTCTACTTCACTCAATGGAAAAT GAATTGATATCTGATGGTGTTCTTGCCCAAGACATAAACCAAGCATCATCCTTTTGGCGTCTACGTGAGGGTATAACCGA GGCATTGATGAGAGTAGGAGCAGTTTACAAATATGATTTATCAATACCTCTTGAAAATCTGTACAATCTTGTCGAAGAAA TGCGCTCTAGACTAGGTAATGCTGCTAATGTAGTTGGATATGGTCACCTTGGAGATGGTAATTTGCATTTAAATATTTCT GTGCCTCAGTATGATGACAAGATTTTATCGCAAATTGAGCCTTTCGTGTACGAATGGACATCTAAACACAATGGCAGTAT TAGCGCAGAGCATGGCCTGGGATTAATGAAAGCTAACGAGATTTTGTATAGCAAGTCACTGGAAACGGTGCAACTAATGG CTTCCATCAAGAGTTTGCTGGATCCCAATCACATACTCAACCCATATAAAGTTCTTCCTCACTCTCTCAATGCATAA
Protein sequence (LotjaGi2g1v0385200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNRNTRATLRLLTPFFNPRRNPSLLPSTPHFDENWWHSQTNIAHGEHRVSSLFNPLRFSVKNQQMGVGISTGIQHKCYA SMPGLVQRNPRFSELNDDDVRYFQEILGQKNVVQDEEKLSTVNTDWMHKYKGSSKLLLQPWNTDQVSQILKYCNSRSLAV VPQGGNTGLVGGSVPVFDEVIVSLSSMNKIISFDKVSGILVCEAGCILENIISFLDNEGFIMPLDLGAKGSCQIGGNVST NAGGLRLVRYGSLHGSVLGVEAVLADGTVLDMLKTLRKDNTGYDLKHLFIGSEGSLGIVTKVAILTPPKLSSVNVALLAC KDYNCCQKLLQEAKRKLGEILSAFEFLDSQSMNLVINHLEGARNPLPTLHDFYVLIETTGSDESSDKQKLEAFLLHSMEN ELISDGVLAQDINQASSFWRLREGITEALMRVGAVYKYDLSIPLENLYNLVEEMRSRLGNAANVVGYGHLGDGNLHLNIS VPQYDDKILSQIEPFVYEWTSKHNGSISAEHGLGLMKANEILYSKSLETVQLMASIKSLLDPNHILNPYKVLPHSLNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 75 | 554 | 480 | 5.2E-253 | – | |
| PANTHER | 75 | 554 | 480 | 5.2E-253 | – | |
| Gene3D | 85 | 185 | 101 | 8.2E-31 | ||
| SUPERFAMILY | 98 | 308 | 211 | 5.14E-65 | ||
| ProSiteProfiles | 130 | 309 | 180 | 24.79 | ||
| Pfam | 136 | 271 | 136 | 2.1E-32 | ||
| Gene3D | 188 | 309 | 122 | 1.9E-41 | ||
| SUPERFAMILY | 283 | 554 | 272 | 2.94E-51 | ||
| Gene3D | 311 | 430 | 120 | 7.4E-35 | – | |
| Pfam | 312 | 551 | 240 | 3.5E-58 | ||
| Gene3D | 433 | 511 | 79 | 3.5E-21 | – | |
| Gene3D | 512 | 552 | 41 | 2.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi2g1v0385200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…