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Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.567s to perform.

Transcript	Name	Description	Chr	Start	End	Strand	Domain predictions	GO predictions
Lj0g3v0086469.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Primary amine oxidase [Medicago truncatula] gi\|357461827\|ref\|XP_003601195.1\|	chr0	34931449	34935022	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
Lj0g3v0161909.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: primary amine oxidase-like [Glycine max] gi\|356557184\|ref\|XP_003546898.1\|	chr0	76231408	76232317	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
Lj0g3v0161929.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Primary amine oxidase [Medicago truncatula] gi\|357462275\|ref\|XP_003601419.1\|	chr0	76233746	76239168	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0055114 GO:0005507
Lj0g3v0278169.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: copper methylamine oxidase-like isoform X1 [Cicer arietinum] gi\|502154328\|ref\|XP_004509661.1\|	chr0	144444727	144451569	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
Lj2g3v1242220.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: primary amine oxidase-like [Glycine max] gi\|356495099\|ref\|XP_003516418.1\|	chr2	19685099	19688962	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0005507 GO:0055114
Lj4g3v2376120.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: primary amine oxidase-like [Cicer arietinum] gi\|502151254\|ref\|XP_004508350.1\|	chr4	32884578	32888140	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
Lj5g3v2046150.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: primary amine oxidase-like [Cicer arietinum] gi\|502119794\|ref\|XP_004496741.1\|	chr5	29518458	29522850	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
Lj5g3v2046160.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	Primary amine oxidase [Medicago truncatula] gi\|357444253\|ref\|XP_003592404.1\|	chr5	29518458	29526198	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
LotjaGi1g1v0196200.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39105636	39119135	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
LotjaGi1g1v0196200.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39105974	39118302	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0005507 GO:0055114
LotjaGi1g1v0196200.4 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39105974	39118486	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
LotjaGi1g1v0196200.5 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39105974	39118545	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0005507 GO:0055114
LotjaGi1g1v0196200.6 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39105974	39118557	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0055114 GO:0008131 GO:0005507 GO:0048038 GO:0009308
LotjaGi1g1v0196200.7 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|G7J4S8\|G7J4S8_MEDTR Amine oxidase; Found in the gene: LotjaGi1g1v0196200	LjG1.1_chr1	39106030	39118486	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0005507 GO:0055114
LotjaGi2g1v0292700.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT1G31710.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q43077\|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3T1X4\|A0A0S3T1X4_PHAAN Amine oxidase; Found in the gene: LotjaGi2g1v0292700	LjG1.1_chr2	76719019	76723077	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
LotjaGi4g1v0157600.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07123\|AMO2_ARTS1 Copper methylamine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470136	27484332	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0048038 GO:0009308 GO:0008131 GO:0005507 GO:0055114
LotjaGi4g1v0157600.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483202	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0008131 GO:0005507 GO:0055114 GO:0048038 GO:0009308
LotjaGi4g1v0157600.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483288	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
LotjaGi4g1v0157600.4 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483298	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
LotjaGi4g1v0157600.5 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483315	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
LotjaGi4g1v0157600.6 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07123\|AMO2_ARTS1 Copper methylamine oxidase; TrEMBL-Plants: tr\|A0A0L9TMN1\|A0A0L9TMN1_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483315	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0055114 GO:0005507 GO:0048038
LotjaGi4g1v0157600.7 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|K7MS36\|K7MS36_SOYBN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27470495	27483315	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
LotjaGi4g1v0157600.8 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT2G42490.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q07121\|AMO1_ARTS1 Primary amine oxidase; TrEMBL-Plants: tr\|A0A0S3R2H7\|A0A0S3R2H7_PHAAN Amine oxidase; Found in the gene: LotjaGi4g1v0157600	LjG1.1_chr4	27477010	27483298	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
LotjaGi4g1v0349800.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT1G31690.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q43077\|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr\|I1MRA7\|I1MRA7_SOYBN Amine oxidase; Found in the gene: LotjaGi4g1v0349800	LjG1.1_chr4	72867341	72871058	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0055114 GO:0048038 GO:0005507 GO:0009308 GO:0008131
LotjaGi5g1v0249200.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q8H1H9\|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr\|A0A151SZV1\|A0A151SZV1_CAJCA Amine oxidase; Found in the gene: LotjaGi5g1v0249200	LjG1.1_chr5	55768642	55783225	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
LotjaGi5g1v0249200.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q8H1H9\|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr\|G7J7B0\|G7J7B0_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0249200	LjG1.1_chr5	55768642	55783225	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131
LotjaGi5g1v0249200.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT4G12290.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q8H1H9\|AMO_ARATH Primary amine oxidase; TrEMBL-Plants: tr\|G7J7B0\|G7J7B0_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0249200	LjG1.1_chr5	55771649	55775802	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0048038 GO:0008131 GO:0005507 GO:0055114
LotjaGi5g1v0314400.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT4G14940.1 amine oxidase 1; Swiss-Prot: sp\|O23349\|AO1_ARATH Primary amine oxidase 1; TrEMBL-Plants: tr\|I1NGE1\|I1NGE1_SOYBN Amine oxidase; Found in the gene: LotjaGi5g1v0314400	LjG1.1_chr5	63266645	63271223	+	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0009308 GO:0008131 GO:0005507 GO:0055114 GO:0048038
LotjaGi5g1v0314500.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Amine oxidase; TAIR: AT1G31690.1 Copper amine oxidase family protein; Swiss-Prot: sp\|Q43077\|AMO_PEA Primary amine oxidase; TrEMBL-Plants: tr\|G7ID65\|G7ID65_MEDTR Amine oxidase; Found in the gene: LotjaGi5g1v0314500	LjG1.1_chr5	63266645	63274462	-	2 domain predictions IPR016182 SSF54416	5 GO terms GO:0005507 GO:0055114 GO:0048038 GO:0009308 GO:0008131