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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1242220 |
| Transcript ID | Lj2g3v1242220.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: primary amine oxidase-like [Glycine max] gi|356495099|ref|XP_003516418.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 664 | 645 | – | – | |
| PANTHER | 22 | 663 | 642 | 0 | ||
| PANTHER | 22 | 663 | 642 | 0 | – | |
| SUPERFAMILY | 28 | 111 | 84 | 6.80E-20 | ||
| Gene3D | 29 | 111 | 83 | 8.10E-22 | – | |
| Pfam | 30 | 109 | 80 | 6.30E-10 | ||
| SUPERFAMILY | 116 | 222 | 107 | 2.52E-32 | ||
| Pfam | 118 | 214 | 97 | 5.30E-19 | ||
| Gene3D | 120 | 214 | 95 | 7.00E-30 | – | |
| SUPERFAMILY | 227 | 659 | 433 | 3.01E-149 | ||
| Pfam | 241 | 653 | 413 | 2.50E-134 | ||
| Gene3D | 248 | 654 | 407 | 1.80E-145 | ||
| ProSitePatterns | 393 | 406 | 14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. | ||
| Molecular function | Primary amine oxidase activity | Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide. | ||
| Biological process | Amine metabolic process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. | ||
| Molecular function | Quinone binding | Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of Lj2g3v1242220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1242220.1, powered by CORGI.
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