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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017888
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.604s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0128449.1
n.a. PlCYC3 [Pueraria montana var]. lobata] gi|21624279|dbj|BAC01126.1| chr0 58004878 58005831 -
2 domain predictions
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Lj1g3v0101540.1
n.a. CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| chr1 972434 973546 +
2 domain predictions
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Lj1g3v3116640.1
n.a. CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| chr1 35525137 35527213 -
2 domain predictions
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Lj1g3v3116640.2
n.a. CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| chr1 35525137 35527213 -
2 domain predictions
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Lj4g3v1787030.1
n.a. CYC5 [Lotus japonicus] gi|78214558|gb|ABB36474.1| chr4 25292403 25294351 -
2 domain predictions
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Lj4g3v2468440.1
n.a. PREDICTED: transcription factor TCP2-like [Vitis vinifera] gi|225443918|ref|XP_002271548.1| chr4 33772774 33782323 -
2 domain predictions
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Lj5g3v2045620.1
n.a. CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| chr5 29263939 29264783 -
2 domain predictions
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Lj6g3v1946420.1
n.a. PREDICTED: transcription factor TCP2-like [Glycine max] gi|356546508|ref|XP_003541668.1| chr6 22221608 22228834 -
2 domain predictions
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LotjaGi1g1v0525300.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK58|Q1WK58_LOTJA CYC1; Found in the gene: LotjaGi1g1v0525300 LjG1.1_chr1 105167967 105170597 -
2 domain predictions
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LotjaGi2g1v0055700.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK57|Q1WK57_LOTJA CYC2; Found in the gene: LotjaGi2g1v0055700 LjG1.1_chr2 11253760 11256583 +
2 domain predictions
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LotjaGi4g1v0263700.1
n.a. Cycloidea-like protein group 1A; TAIR: AT3G18550.2 TCP family transcription factor; Swiss-Prot: sp|Q93WI2|TB1_MAIZE Transcription factor TEOSINTE BRANCHED 1; TrEMBL-Plants: tr|Q1WK55|Q1WK55_LOTJA CYC5; Found in the gene: LotjaGi4g1v0263700 LjG1.1_chr4 62748943 62750932 -
2 domain predictions
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LotjaGi4g1v0360900.1
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A1J7H2B4|A0A1J7H2B4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360900 LjG1.1_chr4 73947790 73963488 -
2 domain predictions
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LotjaGi5g1v0311900.1
n.a. Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK56|Q1WK56_LOTJA CYC3; Found in the gene: LotjaGi5g1v0311900 LjG1.1_chr5 62996406 63000098 -
2 domain predictions
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LotjaGi6g1v0311400.1
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62988228 62996497 -
2 domain predictions
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LotjaGi6g1v0311400.2
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62988902 62996468 -
2 domain predictions
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LotjaGi6g1v0311400.3
n.a. TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 LjG1.1_chr6 62991181 62995439 -
2 domain predictions
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