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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0311400 |
| Transcript ID | LotjaGi6g1v0311400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62988902..62996468) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAGTAAATTGGAGAGAAAGCAAGGGACAAAGATGTAATGAAATGAAGATCACATAAAATGTGGGCCGATAAGCTCG GTGTTTGATTGTTGGAACGAGGAACTACAATCTCTTCTTCCTTAGTTCATGTTGCACCTGAGGTAGCCACTTTCACTTGA CCCTTGTACTTGCTTTGAATCTCAAAATTCATCAAACAATCACACACCTGAATTTTTACTAACTTTTTCTCTTAGCCTCA AACAATCCTTAAGTACATTTTTCTGTCTCTCTTTTGTCTCTTCTCACTCACTCTATGACCATAGCTTCATGATTACTCAC ATGTGTATATAGAGAGAGTGAGAGGTGTGTGAATCAAACACCAAATTCAGCTCAGTAACATGCTTTTATGGTTTAGTGGT GGATTTGAGGTCTTTTGCTTTGAACAACAAGATTGTTTGCTTTAGATAGATAGAGGGAGAGTAGAAAAATCTGAACTTTT TTCTTTTGCATTTCAAGGTGCACTTGAGAAGCAAGCAAAGAATGTCCATTTGGGGAATTCAACAGCTCCTGAAATAACAA AGCAAAGTAGGCATATCCATGCTATGGAGGAAGCTACTTTTATCTCTACTTGGTTTAGTTTTTTTGATTAAGCTGAATTT TGAAGGTTCTGAATTTTGGTTTTGCTTCATGAATGGAACTCCAGGTACACAGATCTATGAGAAACAATTCTCTTTTCCCT CTCCAGCCTTGAGAGCTTGACACAGTCTAGTCTCCAACAATGTTCAAAGCAACAAACTCAGGCTCAGATCGAAGAGGTAC ATACATATAGTCTTCAAGCATTTCTATGAAGTTCTCAATAAAACAATTAGATGTTTACTTTTTTTAAGGTTTAGCTTCAG ATCTTATCTTCTGTGTTGTAATAAGTGAGCCTGAGAATGTTTTGGTAGCTTTATTTTATGTTTTATTTTTTAATCTATCT GATTATATTGATGATAATAAATAAAAAATAAAATAATTTTTTTGGGGTGTTCTTTGTCCCTGTGGTTGCAGGAAGCTGAG GCTCTGAGACCTACTCATCAGTGTTTTGCTTTTGAAAGCTTTCTGCAAACTGAGAAAAAGCTTTAACAAGAGGCTCCTCC TGACTTGGACTGTGATATATCACTGCTTTAAAAAAAATAAAATTAGACCTTTCAATCACTACACAGAGCCAAGTTACTGA GTTATCATCATCAATGCATAGCACATAGCAGCCCCACTTTTTACACTCTCTCATCACTCACTCACTTCCTTCTTTCTTCT CTCTCTATATACTTTATGTGAGGATAAGAGAGGGAGAAGGCAAAGATTTGAGTTGAAAAAAGGCATGATAATTGTGATAT GGAGGAGGATGAGATTCAAGAACAGGTTTCTAAGTTCCCAAGAATTGAAAATGGCACCACTTTCCAAAGTAGCAGCTGGC ACAACAACTCTTCAAGAATAGTGAGGGTGTCTAGAGCCTCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCTAAG GGGTTAAGGGATAGAAGAGTTAGGCTCTCAGTGTCCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTGTTGA CCAGCCAAGCAAAGCTGTGGACTGGTTAATCAAAGCTGCTGAAGATGCTATCTCAGAGCTCCCTTCTCTCAACAACCTTT TCCCTGAAACCCCACAGCAACAAAGTGATCATGAGAATCAGAACCTGAACCAGAATCTTAACTCCTTGTCCAAATCTGCT TGCAGCAGCAATTCTGAGACAAGCAAAGGCTCTGGTGGCTTGTCCCTCTCGCGGTGTGAGAATCGCGTCAAGGCGAGGGA GAGGGCAAGGGAAAGAGCAGCAAAGGAGAAAGAGAATGAGTCAAGCATTGCACACAATGTAAACAACAACCACCACCACA TGTCTCAAACTGCTTCTTTCACTGAGCTACTCACTGGTGGAATTGGAAGCACAGTGACAGTTCCCACCACCACAGCTAGT CCCACTGGGTCAGTTCATCAAACACATGGTGGCCATCATCAATGGTCTTCAACTGTAACTCCAATGGACTACTTCAGCTC TGGCCTTCTGATGGGACATTCATCTTCAAGAACTCATCAATCTTCTTCCTCTTCTTCTTCATCTCCTGGATTCTCAGGGC AAATCCAATTAGGACATTCACTTCCGGTTTCACCGTTCAGCGGCGAAAACCACTCAGATCAGATGCAGCGTTTCTCCTTC ATGCCTGAACATCTGATGGTTACTTCATCTTCTTGTTCTACTCAGCCTAGCGGGATCAGTGACTACAATCTCAACTTCAC CATATCTCCTGGCCTTGCTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGCCTCATCATCACC ATCTGCAGAGGTTTTCTTCTTCACAAGTAGACGGTTCATCATCCAATAACAATCTACCTTTCTTCATGGGAGGAGCTGCT GCTGCTCCTTCAACCATGGAAAACCATCACCACCTTCAATTCTCACCTCTCTTCGATGGCCGCTTGCAACTTTGCTACGG CGACGGAAGCAGAAACTCAGACCAGAAGGGGAAAGGCAAGAACTGATGTTCCTGGATGATCACATTTCTCTTCTTCCTAT CTTCTTCCTGGTAAGAAAAAAACAAATATTTTTCATGTTTTCCATGTTTTTCCTTATTGTTTAAGCTTCATAGATGTGAA TGGTTAAGTGTGTTTGGATACAAGTTAAACCTAAATTGAAAATGCTTTTTTTCAATCCATAGAGTTCTCACTATATCTCG AGGTCAGTACTAACGCAACATACATCTGTTTGCACCAGTGCCAAAGAGAGTATCCAAAAATTTGCAGAAATGTTTTATGT AATGAATGATATATCATGAAAGATAATAGTAATAAATTTTAAATTAACATTTTAGTGATTTATAAAGATAGATTAGCACA AGCCTGAGAGAGCTAGCATGTGAGAGCTAAGCTAATTTGCTATTTGTTTCCCTTTTACCCCTTTTCCATTACATGCTTTG CCCTTGGTAAACCTAGGAGGACGCAAGATAAACAACTTTTATAGTAATTTGGTTGAGTGTGTGAGACAGTGAGAGAGAGT GTGTGTGGTTTATTCATTTATTTAGGTTTTTGAAAGATGGTGGTCTTGGATTTATGTGATGTGTGCAATACCATGAGCCG TTGGGTTTCTTGGGAAGCATAAAGCAAAATGGCCACTGAGCATTGTTTTAGGGGATGCTATGTATGATCTGTTTATTTAA TTTTTGTCTTTTTGTTTAGTCATGCATTGCATGGATTGGCGTGAATAGGGTTTTCCATTGGTTGTGTCCATTTTTGTTCT ATCCTTGTCCCTGGTTCCCCTTCTCTGTGGCACAGGCCAGGTGTAAGATATTTTGTGGTAATTACATTGTGTGATTCAGG TAAATAAATGTCTTAATGACTCTGCCAAAACGAAACTCTAGAATAGCTTTTATACAATCTCTGTTCATTTCACTCCCCCG AGCTGCAACAAACACATAATGACATGATTCTAAGCGGCGTATTGTCAGTTTTTTCGAGGGAAAATATAAGCATATAGTAG TATAGAGTAAATGTAAAGTTTTGTTGGGTAGGTTGACCACACTTGGCATCAAGGCTATTTCATATGCTGAAAGGTCCATG CACATAGCCAGAACGACTCTTCAAGCACACAAAAAGCAGTTTTAATTGAAGAAAAAAATCATACTTTTAGGATTTACTAG CTTATGTGTGTGTGTATATATATATATATATTATTTGTTTATGAATCTAATACTGATGTTGCCGCTCACATGTGAATAGA AACAACATATCATGTACATTAGTTCAACTTTGTGTGTATGTATATATCTTAATTTATGGTTCAACTTTAAAAAAAAGAAA AAGAATGAAATGTTTCACTTAAAAATTGTACATAAGTTCTTTCTAAAAGAATATACATTAGTTTATTCTTAACTAGTTTT TGGACCTACTTAAAAAATCTTGATTTAGGTGTGAGAGACAAATAAGTAGTGGAAAATTATGCTAGCTAGTGACTATAGTT TATCTTTTCGGTGGTATGAAAGTGGGTAATGCCCCACGCCTTGTAACCTCAAGCATGCTCTAGTCTAAACTCTAAACCTT TCTTTCATAATCCTTTCCCTAAATTTCAAAGATACTCCTATCATATCTATCCTTAGCCCCTAGGAAAGCCACACTGTAGA AATAAAGTAAGGATACCTTGTGAGATCATCAGTATATATATATATACTGAAGTAAGTAATCTTTGATCAATAATACTTTG TACACATACCATTTTCATCTCACCCTCATGAAATATGAACAAATGAGAGAGAAAAAAATGTGATATGTTAGGTGATGAGA TAGGAAATGCAGAGAGAGATAGAAAGAAAAGAGTGAAAATGAAATAAAAGAAAAAGTAATGTGTAAATGAATCATTACTC AATCTTTGATGCTAGTTTCATAGCCAAGAAAGAGGCATTTGTGAGCTCTCGGGTATAATTTGGTTCTATGTTGAGCAGCC ATTAGCCAAGTATGTCTTGTGAAACCATAAGCAGTTGCTCTGAAGTATTTTTTGAAAGGCCAAACAATTCATTAAAAAAA AGGTGCTAAACACAGATACAATATAGTTCAGAACAAGTCCAATGGCCCAATGTACATAACCTACCAAGCTACAATGGCCA AATACTACTTATATACCTTGCTTTTGCCTCACCTAAACAAGACATTCACCTATGACAATTTTACTAAATTTATAGCAGCA ATTAGAAAAGATTATATTAAAACCTCAACCACTAGTATAATGATCACTAGCATAATGGTCACAGGAGAACTCACTATGCA CCTAGCTACTTCCACCCCACCCCAGTTTCTTCTTTTAATAATCATTAATTGCAGTTCATCCACTATAAATGCAACTTTCA AAATCACGACAACTCTTTAAGAATCTATCAAGTTCAGGTTCTGAAACTAGTTGAGATGCAAGCTGCTTAATCAGTTCTAG GACGTGAACCTGATTGTTTTGAAAGAGCTGTTGCGGTTTTGGAGGTGACATGTGGTGATTTGACTGCAATCATTGTTTAA AGACGAGACCGAGGTGATTCCTACTTAGTGGTGTGGAAGTAGTTGGTTGCAACATGGGTTTGATGCTTGTGATTATTATG CTAGTGATCATTATAATAGTCTAAGATTTTTAATATGGTATTTTCTAATTGCTACAGTATATGTCATAGGTGAATGGCCC TGTGCAGATGGAGCAAAAACAGGTACATAAGTAGTATTTGCCCATTGTATGATGATAGCCTCATGTTGGGTTTTTAGTGG CTAGGAAGTAATGATGACCATAAATTGAGGATATGGATACAGCCATATAGGAGATGAAGGGGGCGGGCGAGATGTAGAAG AAACGCAAGATTGATGGTGTGGGAGAGAGGAAAAAGTCTGGAGTAGGCGGGGTATTAGGGTGGATGAGGGTTTGTGATAT GTGTATATTAGTGAATGAGTGTGGTGTATATTATATTTGCTCGTGGCTGTATTTTTCAACTAAATGTGGAGGACATGATA CGAGTTGATCTTGTTAGGCTGCAACATGAGAAGAGATGGGCGTTCTATTTCCTTAGCTGATACTTGCTGGTTTTTCATCT TAGGTGGTTTGGTATCTACTCTTTTGGTGGTTTTGTTGCTGAATATTTTATGGGTTTGTGGTGGTGGACTATATATTCAG TTGCAGATCATTATTGCTGAACAACATATCTTGGTGTGGTTTATGTTTTCTCTGGTTAGATTTGTTATTCCTTTTTGGAA TTTGGTTACTTACCCTATATGAGAAAGGGTTGTTCTCATGTATCCATAAAATTAGTACAGTAAAGTTTGCTTCGCCATTA ATTTCCACTTACACTTTTACTTAAAAAGAGAAAAAAGAGAATTGAAAGATATGATAGATGATGTGATAAAAAAGAAAAGA GAGATAAAATGTGAAAGTAAGTGAAAATGAGATAAAAAAAAATGAAGTATGAATAAATGTAAACTTTATTAATATTACTT ATCATGATGTTTCTTTGTTTTTAAATGGAGGATATGACTTTCAAAAAAAATGGAGGATATGGATACAGGCCCTTAAGTGT GTTGAGTTAAATCACTTTTAAGATGTGTATGTGAGTAAGTTTTGGAGGGAAAAGAAGGAAAAAAGGGTGACTTATGCCTT TGTTTTTGAAGTTTTTAAGAAGGGAGAAAGTGTTTGGGGTATTTCCAAAAACACTCAAAGACCCTCCAAAGTTTTGGGGT ATTTGGATCTGCCAAACAAGAGAATGACTTACGGAGGACCCCATCTCCCTCCCTCTCTTTTGAGAAGTAAGGGTTTGAGG AATTTTTTAAAATCCTCCTAGACCCTAATTTAGTTGTTTAATGAAGTTCCCCCAAATTGGAGGGTTTATAATTTGAAGAT AAGGGAAGGGCTTACCCCATGCCCTCTCCTCCCATTCCCTCAAAGCATTCCCCTTCTCTCCCCTAAGTACTCACAAACAC ACACCATTTATTTTTTGAAATGCACAAGCACACACCATAAATGAACTAACTAATTAATCTAACCAAGCCATAGATTAGTT GATTTTATGTTGATAGATAGATGAGAGGTAAAACCAGAAATTAGACTTTATGTTGGTTGGTTTGAGGTCCTTAGGATGTC TGTGTTGAGAGAATAAGATGCTGCCATGTTTCTACATATTTTTCAAATGTGTATTTATTTGTTGCCTGGGTGCATATATA CCATTTTTCCTGCTAGGTTAAGATATGGTGCAATGATGTTTTATTTGGTGGTTGTGAACTGTTAAAACACTTGAACAATA TCCTTCATGATCTTTAGGTGCCTTGATCCAATATGAGAAAGGATGTTGTTTGTCATGATTTTCATTACTTACAATAAAGT TTTTTATAAAGATAAGATAGAAAAGGGGTAGAAACTAGATAATGATCACATTTTTTGTTTCAGTCTTTGTTTATACTACT TCTCTCCTTGCTATAAGCATCTACTAATGTTTGTCTTTTTTTCTTTAAATAGGAATTGTCTTCTGCCTCTATAATGTTGG AGCAGCAAGCTGTGTCCCAAGCTTGCCTTCTGCAAAATGGAGGGTATGTTGTTGTCAATCATCAAGTGTAATATCTTGGA TCATTTTGAGGCAGCATTAAATTTCTTTGAGTATTTGGATATTTTTTTCTTATGCATGGAGATTGATTACTGTATTTTGG AGAAATGTAGAGAATCTTGAATGAATTTATTCTTTTGATTTCTACCATTATTTTGAAGTATTCTGTACTGTTGGTTGAGA AAAGAGGTGTAATTTCAACTTCTTTAGTGCCATTTCTAGCCCAAAAAGAACCAAAATTTATAATGAATCAGGTGGCCCAA AAAGAAAGTGAGCCAGTCACTACTTGAAACTTTGCTGCATATCATGGACCTAGTCATTTGGACCAAAAAGAGAAACCCAA TTGTCAAAAAATGCCAAAACTTTAATTGATTAAAGATTGAACAACAA
CDS sequence (LotjaGi6g1v0311400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGGATGAGATTCAAGAACAGGTTTCTAAGTTCCCAAGAATTGAAAATGGCACCACTTTCCAAAGTAGCAGCTG GCACAACAACTCTTCAAGAATAGTGAGGGTGTCTAGAGCCTCTGGTGGCAAAGACAGGCACAGCAAGGTGATGACTTCTA AGGGGTTAAGGGATAGAAGAGTTAGGCTCTCAGTGTCCACAGCTATTCAGTTCTATGACCTTCAAGATCGCTTGGGTGTT GACCAGCCAAGCAAAGCTGTGGACTGGTTAATCAAAGCTGCTGAAGATGCTATCTCAGAGCTCCCTTCTCTCAACAACCT TTTCCCTGAAACCCCACAGCAACAAAGTGATCATGAGAATCAGAACCTGAACCAGAATCTTAACTCCTTGTCCAAATCTG CTTGCAGCAGCAATTCTGAGACAAGCAAAGGCTCTGGTGGCTTGTCCCTCTCGCGGTGTGAGAATCGCGTCAAGGCGAGG GAGAGGGCAAGGGAAAGAGCAGCAAAGGAGAAAGAGAATGAGTCAAGCATTGCACACAATGTAAACAACAACCACCACCA CATGTCTCAAACTGCTTCTTTCACTGAGCTACTCACTGGTGGAATTGGAAGCACAGTGACAGTTCCCACCACCACAGCTA GTCCCACTGGGTCAGTTCATCAAACACATGGTGGCCATCATCAATGGTCTTCAACTGTAACTCCAATGGACTACTTCAGC TCTGGCCTTCTGATGGGACATTCATCTTCAAGAACTCATCAATCTTCTTCCTCTTCTTCTTCATCTCCTGGATTCTCAGG GCAAATCCAATTAGGACATTCACTTCCGGTTTCACCGTTCAGCGGCGAAAACCACTCAGATCAGATGCAGCGTTTCTCCT TCATGCCTGAACATCTGATGGTTACTTCATCTTCTTGTTCTACTCAGCCTAGCGGGATCAGTGACTACAATCTCAACTTC ACCATATCTCCTGGCCTTGCTGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTGCCTCATCATCA CCATCTGCAGAGGTTTTCTTCTTCACAAGTAGACGGTTCATCATCCAATAACAATCTACCTTTCTTCATGGGAGGAGCTG CTGCTGCTCCTTCAACCATGGAAAACCATCACCACCTTCAATTCTCACCTCTCTTCGATGGCCGCTTGCAACTTTGCTAC GGCGACGGAAGCAGAAACTCAGACCAGAAGGGGAAAGGCAAGAACTGA
Protein sequence (LotjaGi6g1v0311400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDEIQEQVSKFPRIENGTTFQSSSWHNNSSRIVRVSRASGGKDRHSKVMTSKGLRDRRVRLSVSTAIQFYDLQDRLGV DQPSKAVDWLIKAAEDAISELPSLNNLFPETPQQQSDHENQNLNQNLNSLSKSACSSNSETSKGSGGLSLSRCENRVKAR ERARERAAKEKENESSIAHNVNNNHHHMSQTASFTELLTGGIGSTVTVPTTTASPTGSVHQTHGGHHQWSSTVTPMDYFS SGLLMGHSSSRTHQSSSSSSSSPGFSGQIQLGHSLPVSPFSGENHSDQMQRFSFMPEHLMVTSSSCSTQPSGISDYNLNF TISPGLAAGYNRGTLQSNSPSLLPHHHHLQRFSSSQVDGSSSNNNLPFFMGGAAAAPSTMENHHHLQFSPLFDGRLQLCY GDGSRNSDQKGKGKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 415 | 405 | 2.8E-130 | – | |
| PANTHER | 11 | 415 | 405 | 2.8E-130 | ||
| Pfam | 42 | 173 | 132 | 1.0E-35 | ||
| ProSiteProfiles | 43 | 101 | 59 | 31.732 | ||
| MobiDBLite | 129 | 149 | 21 | - | – | |
| MobiDBLite | 129 | 179 | 51 | - | – | |
| Coils | 150 | 170 | 21 | - | – | |
| ProSiteProfiles | 153 | 171 | 19 | 9.766 | ||
| MobiDBLite | 154 | 176 | 23 | - | – | |
| MobiDBLite | 244 | 286 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi6g1v0311400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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