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IPR017888

Description

IPR017888 is a CYC/TB1, R domain.

<p>Members of the TCP family of transcription factors have so far only been found in plants, where they are implicated in processes related to cell proliferation. It appears that TCP domain (see [prositedoc:PDOC51369]) protein have been recruited during evolution to control cell division and growth in various developmental processes. The TCP proteins fall into two subfamilies, one including CYC and TB1 and the other including the PCFs. Most members of the CYC/TB1 subfamily have an R domain, predicted to form a coiled coil that may mediate protein-protein interactions [[cite:PUB00008402], [cite:PUB00043685]].</p> <p>The R domain is rich in polar residues (arginine, lysine and glutamic acid) and is predicted to form a hydrophilic α-helix [[cite:PUB00008402]].</p> <p>Some proteins known to contain an R domain are listed below:</p> <ul> <li>Antirrhinum majus (Garden snapdragon) cycloidea (CYC). It is involved in the control of floral symmetry, a character that has changed many times during plant evolution</li> <li>Zea mays (Maize) teosinte branched 1 (TB1). It controls the developmental of apical dominance that contributed to the evolution of modern day maize from its wild ancestor teosinte</li> <li>Arabidopsis thaliana (Mouse-ear cress) TCP2 and TCP3, which correlate with actively dividing regions of the floral meristem</li> </ul>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
PlCYC3 [Pueraria montana var]. lobata] gi|21624279|dbj|BAC01126.1| 10
CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| 9
CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| 9
CYC1 [Lotus japonicus] gi|78214552|gb|ABB36471.1| 9
CYC5 [Lotus japonicus] gi|78214558|gb|ABB36474.1| 9
PREDICTED: transcription factor TCP2-like [Vitis vinifera] gi|225443918|ref|XP_002271548.1| 10
CYC3 [Lotus japonicus] gi|78214556|gb|ABB36473.1| 9
PREDICTED: transcription factor TCP2-like [Glycine max] gi|356546508|ref|XP_003541668.1| 10
Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK58|Q1WK58_LOTJA CYC1; Found in the gene: LotjaGi1g1v0525300 9
Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK57|Q1WK57_LOTJA CYC2; Found in the gene: LotjaGi2g1v0055700 9
Cycloidea-like protein group 1A; TAIR: AT3G18550.2 TCP family transcription factor; Swiss-Prot: sp|Q93WI2|TB1_MAIZE Transcription factor TEOSINTE BRANCHED 1; TrEMBL-Plants: tr|Q1WK55|Q1WK55_LOTJA CYC5; Found in the gene: LotjaGi4g1v0263700 9
TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A1J7H2B4|A0A1J7H2B4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360900 10
Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK56|Q1WK56_LOTJA CYC3; Found in the gene: LotjaGi5g1v0311900 10
TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 10
TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 10
TCP transcription factor; TAIR: AT4G18390.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2; Swiss-Prot: sp|Q93V43|TCP2_ARATH Transcription factor TCP2; TrEMBL-Plants: tr|A0A0L9VEY7|A0A0L9VEY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0311400 10

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.25