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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0055700 |
| Transcript ID | LotjaGi2g1v0055700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK57|Q1WK57_LOTJA CYC2; Found in the gene: LotjaGi2g1v0055700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:11253760..11256583) extracted from Lotus japonicus Gifu genome v1.2.
CTCTAAGTGGGATAGAATTGGGGTGTGAAAATATTATTGAACATCAAAATTTCTTTGTATTCAAAATAGTTGCCCTATTT ACACCGTTTCAATTCACTCTCCTTTTACCTCTCGACCCATTGGTTAAAAAGTTGAAGCCTTATACAAGAACCATCTTGCC ATCCCTAGATAGTTTATTTCTTCTGCAAAATAAGAACTTTCCACAACCCCACATTACAAGATCATAAATTAATCAAGCAA GTACAATTTAGATTGTTTACTCACACTTGTACTCCGTATACCTACTTATAATGATCCCCCCACTCTTTCAGATTTTTCTG AAGGGTTAGCAGAACCCTAACCCTAACGAAAGCCAGAGGCAATCAAGGCCAACACACACACCATTAACGGGCTCAAGAGT TGAATGATTTGACCTGCTCTGCTTACCTTGCTTCCACAGAATGGGGAAAAAAACCAACACATGCATTTTATTATACATGT CTTGTCACTCTCTCTTTCTCTCTCTTGGTACCACTAGTCTACTACCAATGCACCTGATTCAGCAGATAATCCATTCACAT AATAATAATTGAATAAATAATATATAGAAGCTATGGAAAGAAAATTCAACTTCCATCATTGGCCTAATTGAAACCCTTTC CTCTTACCGTTTCTGCAAAACAACTTTTTCTTTTTCTTCTGATGATGCGTGTTAAGTCCTCATAAGTAGTTTCCCTTCCC AGAAAAAAAAATATTTACCTATAAAAGGAGGTCATCACTTTGGACCGTTAAGTTGGGAGCTGAAGAAAAACCAGTGATCT TTTTCCTTCTTCTTTCTTCTTCTGCACTGTTGAGTGCTGGGCGGTCCTCCTCTCACAAAAGTTAGGGCTCTTTTGTCCTC TACAGTTAAATTAAAAAAAAAAAGATCTTCAAATGTTCCCTTTCAGCTCAAGCCCTTACCCTTCCTTTCCTTCATCTTCT TCTTCTCCTTTCCACCCTTTTTCTTTCCTCAATCCTGAAAATGTTTCAGCAAGTAACAACACCCTTGTTCTTGATCCACT TTCTGTTCCCTACATACCACAAACTCACCACCACCACCACCACCATCACAACAACTCTCCAGCACTCCCAGAAACACTAA CCAATTTAGCGGTTGCCGGCAGTCCTGATAACTGTTCGGCAATGCCTAAACCAGATCCTAGTGGCCCTCACTATGGCATT TCCTGTCTCCTCACTAAGAAACCAGCTAAGAAAGACCGGCACAGCAAGATTTACACCTCTCAGGGGCTGAGGGACCGGAG GGTGAGGCTCTCAATCGAGATCGCAAGAAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGATAAAGCCAGCAACACCC TCGAGTGGCTCTTCAACAAGTCCAAGAGAGCCATCAAGGATCTCGCTCGGAGCAAGAACAGCAACAGTGGTGGTGGTGGT GACCATGACAACAACAAGAGCTTCTCTTCCGAAGAAGATGAAGACTGTGAAGTTGTCTCATCAAACCTACAACAAGATCA AGAGCAAAGGTTAGATTCAAACCATAATAAAGGGGGTGGTGCTGAAAAAGAGCTGTTGAATAAGTTGAAAAGGGCACAGA AGGAACCTTCTTGTGCTCGTGCAAAGATAAAGGAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACAAGTAAC AAGATCTGCAACAACAACAACAACACCACGCTGAAGAAAAAGCTCCCTGCTACTGAAAACTCTCTAATCTTACAGCAACC AAAGTCTCCACCAAGGATGCTTCACCACCCTCACCCTCATCATCTTCATCACCACCTTGTGGGCGGTGAGGCGCCAAGAG ATGACTTCAACGTTATTGAGGAATCCATTGTGATCAAGAGAAAATTGAAGCCATGGTTGATGTCTTCTTCTTCTCATCAT CATCATCACCAACAACAACAACACCATAATCTTGTGATCCCTAAGGAAGGGAGTTTCAACAACAACAGTGAATACCACTC CTTCCCCAATTCATCTCCAAATTGGGATAACAACACTAGCAACAGTGCCACTAGCCGCTCCAACTTTTGTACAATAGCCA GCATGAACCTATCAACAGGTATGTGCTTGTGTGTGTAAGTCTCTCTTTCTTGAAATTTAGCTCGGATCAGGGTTATAAAT TGCGGCTACAGCAAACTGAAATTTGATGCGGTTGCAATTGCGGTCGCGATGTCGCTGAGGGAAATTCAAAACCCTTTTAT GTGGCCACCCCAACTGCAGTTGTGGATCGCAATTTGAAACCCTGGCTAGGATCTTGATGGAATTTACAGTTCTACAAGTT ATGATTTTTTCAGGGCTCCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACAAATCCACGTCCACACTAGTAAATAATGTT GGTGTGTTTTCAGTATATCATCTTCTGATCTTGAAACTCAATCTAGTGCCTTGCCAAGGAGTATGGTATTATTGAACCTT TTCTGTGTTTTCCACCAGTAACTTTTCTGTCCTTCATTCTCTTTCATTCAACAATGTTTGTACTCATGTTCGATCAGCCA ATGGCGTGTGACAGTTGGCCACAGAGGTTGCTGCTGCGTGTGTTGTTTCTGACCAATAATTTCAAAGTGTTGTTGGCATT GTATGATAATTATTCCAATTAGTTATCAAGAAACTGTTCCTTCTAGATTTTAATTAATATTTATTTATATATTTGCTTAA ATGTTCAATAGTCACTAGAGAAAATGTGTTTGGATCCTCTCCAGCAAGTTTCTCTACCGCTACTTTCCTGCATAATTTTA AATTGATTCTTGTGATCAATGGCT
CDS sequence (LotjaGi2g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCTTTCAGCTCAAGCCCTTACCCTTCCTTTCCTTCATCTTCTTCTTCTCCTTTCCACCCTTTTTCTTTCCTCAA TCCTGAAAATGTTTCAGCAAGTAACAACACCCTTGTTCTTGATCCACTTTCTGTTCCCTACATACCACAAACTCACCACC ACCACCACCACCATCACAACAACTCTCCAGCACTCCCAGAAACACTAACCAATTTAGCGGTTGCCGGCAGTCCTGATAAC TGTTCGGCAATGCCTAAACCAGATCCTAGTGGCCCTCACTATGGCATTTCCTGTCTCCTCACTAAGAAACCAGCTAAGAA AGACCGGCACAGCAAGATTTACACCTCTCAGGGGCTGAGGGACCGGAGGGTGAGGCTCTCAATCGAGATCGCAAGAAAGT TCTTTGATCTTCAAGACATGCTAGGGTTTGATAAAGCCAGCAACACCCTCGAGTGGCTCTTCAACAAGTCCAAGAGAGCC ATCAAGGATCTCGCTCGGAGCAAGAACAGCAACAGTGGTGGTGGTGGTGACCATGACAACAACAAGAGCTTCTCTTCCGA AGAAGATGAAGACTGTGAAGTTGTCTCATCAAACCTACAACAAGATCAAGAGCAAAGGTTAGATTCAAACCATAATAAAG GGGGTGGTGCTGAAAAAGAGCTGTTGAATAAGTTGAAAAGGGCACAGAAGGAACCTTCTTGTGCTCGTGCAAAGATAAAG GAATCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGGACAAGTAACAAGATCTGCAACAACAACAACAACACCACGCT GAAGAAAAAGCTCCCTGCTACTGAAAACTCTCTAATCTTACAGCAACCAAAGTCTCCACCAAGGATGCTTCACCACCCTC ACCCTCATCATCTTCATCACCACCTTGTGGGCGGTGAGGCGCCAAGAGATGACTTCAACGTTATTGAGGAATCCATTGTG ATCAAGAGAAAATTGAAGCCATGGTTGATGTCTTCTTCTTCTCATCATCATCATCACCAACAACAACAACACCATAATCT TGTGATCCCTAAGGAAGGGAGTTTCAACAACAACAGTGAATACCACTCCTTCCCCAATTCATCTCCAAATTGGGATAACA ACACTAGCAACAGTGCCACTAGCCGCTCCAACTTTTGTACAATAGCCAGCATGAACCTATCAACAGGGCTCCAAATCTTT GGAAAGTCTTGGGAGGAGTGCACAAATCCACGTCCACACTAG
Protein sequence (LotjaGi2g1v0055700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPFSSSPYPSFPSSSSSPFHPFSFLNPENVSASNNTLVLDPLSVPYIPQTHHHHHHHHNNSPALPETLTNLAVAGSPDN CSAMPKPDPSGPHYGISCLLTKKPAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRA IKDLARSKNSNSGGGGDHDNNKSFSSEEDEDCEVVSSNLQQDQEQRLDSNHNKGGGAEKELLNKLKRAQKEPSCARAKIK ESREKARARARERTSNKICNNNNNTTLKKKLPATENSLILQQPKSPPRMLHHPHPHHLHHHLVGGEAPRDDFNVIEESIV IKRKLKPWLMSSSSHHHHHQQQQHHNLVIPKEGSFNNNSEYHSFPNSSPNWDNNTSNSATSRSNFCTIASMNLSTGLQIF GKSWEECTNPRPH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 409 | 406 | 4.8E-89 | – | |
| PANTHER | 4 | 409 | 406 | 4.8E-89 | ||
| Pfam | 105 | 260 | 156 | 5.4E-46 | ||
| ProSiteProfiles | 106 | 164 | 59 | 35.394 | ||
| MobiDBLite | 165 | 269 | 105 | - | – | |
| MobiDBLite | 166 | 180 | 15 | - | – | |
| MobiDBLite | 206 | 254 | 49 | - | – | |
| ProSiteProfiles | 240 | 257 | 18 | 11.607 | ||
| MobiDBLite | 255 | 269 | 15 | - | – | |
| MobiDBLite | 357 | 377 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi2g1v0055700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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