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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0525300 |
| Transcript ID | LotjaGi1g1v0525300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cycloidea-like protein group 1A; TAIR: AT1G67260.1 TCP family transcription factor; Swiss-Prot: sp|Q9FYG7|TCP1_ARATH Transcription factor TCP1; TrEMBL-Plants: tr|Q1WK58|Q1WK58_LOTJA CYC1; Found in the gene: LotjaGi1g1v0525300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105167967..105170597) extracted from Lotus japonicus Gifu genome v1.2.
GTCCCCTATCTCTCTCTCCAGTTCCCACCTAATCAGCACCGATGTCTGTGGTCCAGTCCACCACACCCAGATAGATATGG AGGTTTCTTACTGTGTAAACCCAACCCGAGTTCAATCTCATTGGCCTAAATGAAATCCTTCCTCTCATCAGTTTCTTTCA AACCACTTTCCAACCTTTCTCCTTGGCTGTGTTATACTTCTTCCTACTCATCATCATCATAACCAGTTCCTTTAATTTCA TCTGACAACTGAAAGGTACTTTGAATCTGAGAAAAAGAACCTAACCATTTCATCATCACAAACAAGAACATAGCTAGGGT TTTTGTCCACTGCAAAATCTTCAGATGTTCCCTAATTCCAGTTACCCTTACCCTTATTTTCCTTCTTCCTCATCTTCTTC TCCTTCACCATACCCTCCTTTCAATTTCCTCAACCCTGGAAATGCTTCAACAAACAACATCTTCCTCCATGACCCTCCTC CTCTTCCTTCTGTCCCCTACACAAACAACACCACCAACACTCACCACCACCATGCCCCTCCAACCTGCTCAGAAACCTTC ACCAATTGGGCACTTGCAGATGCAATGCTCAAGCAAGAAAACCTCACTGGTGGGCCCCACCATCACTACAACCTCTCCAA CTTCCTCACCAGAAAACTACCAGCAGCAAAAAAACCAGCCAAGAAGGACAGGCACAGCAAGATTCACACCTCTCAGGGCT TGAGGGACAGGAGGGTGAGGCTTTCAATCGAGATCGCGCGAAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAA GCCAGCAATACCCTCGAGTGGCTCTTCAGCAAATCAAACAAAGCAATTGAAGAGCTTTTCAGAAGCAAGCATAGTGATAA TAACAATAGCACTGGTGCTTGTGCTGCTGATGGTGATGGTGATGGTGATGATGACAGCTTCTCCTCTTCCTCTTCAGAAG ATGAAGTTGTTTCTGTGAAAAGGGCACAGAAAGAAAAAGAACCTTCTGGTGTTCAAGCAAAGATGAAGGAATCAAGGGAA AAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTAACAAGATGTGCCCTGAAACTGAAAATCCTCAAATGCAGCTTCACCA ATTCAGTTCAGAGTTTCAGCCTCATCAGGAACTGCATAGAGATGATGATTTCAAGGTTTTTGAGGAATCCATTGTGATCA AGAGGAAGTTGAAGCAATCATTGATGTCTTCTTCTCATCATCACCAGAACCAAAACATTGGGATCCCTAAGGAAGCAAGT TTCAACAACAACAACAATAGTGAGTGTCCCTCTTCCTTCCCTATGTCTCCAAATTGGGATGCTAGTGGTGCCACTCCACG CTCAAACATTTGTGCAATAGCCAGCGTGAATCTCTCAACAGGTGAGCGTGTGTGTGTCAGTGTGTGTGTTTCATCAAGAA GCAGCCAATAACATGTTTGGGTCAATATAATATCTATTAGTACATCGGAGTGAATTTGAAACACATAAGTTACTCACAGA AGCATTTTATATTATTATAGAAGAATTATTACATTTTGAAAACCATTCTGCAATTGATTCCAAAGCTAGAATCAATTCTA GGGAAAAACCTATGTGAGTAGCTTTTAAGTATCATAATTTGATTTTGAGGGGAGAGAAATTGATCTAAACATGCTATATA TTAATCCTAAAAAGGATTTCCAAATATGACTGACTTTTTCTTGAACTCTTTTCTTATAGATGTTTCATCAAAATCATTTA TGAAATGTAGATGGTACTTGAAGAAGTTTCTCCCCAAATTCTGAATTCAGAATTATTATTCCATAATTAAAAAAACTTTT GCTATTAATTCTAAAGTAGTCAGAAATTCAGGGGAGAAGTTAAAACTTGGGTGTTTTCAGAACTAATGATACTGGTTATG AGGAAAGAGAATTTGATTTTTGACTTTCCTTTCTTGCAATCTCTATTTTGATTTTTGTCATATATACTTACAATTGTGAA GTCATAATTTTTAGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCTCATCTACACTAAAATATGTTAG TTTTCATCATAATCTATGATCTGAGTGAAGTCTCAAGTACTTTGCCAAGGAATTATTAATCATGGAGGCATCTTTCAATT CTGTGACATTTTCTCTGTGCCCGATCTTTCTCTTTGGACGATGTCTGTACTTATCTTTTTGCTCATGATCAACCAGGGCC TGTGACAGTTGGCAAAACAATTTAAAGGATGCTAGCTGCGTGTATTGTTTATGACCAATATTTAAAGTGTGGCTCATGTC ATATAAAGGCCAACTATGTTTATCAAGAACTGTCCCCTTTCTACCAGATTTCAATATTTACATATGTAATTTTTGGTTTA TCATCTCTTTATTATTAACTGATGATATATATTCCATGGTTGGAAACTTCTAAGCAGCTTTATCCCCTTGGTTGAAAGAG GAGGTACACAAGAAATTTCAGATCTTTGAGCTTTTGCTTGCACCGGAGGTATACATGTTGGGTATGAATATTATATATGC TGATTTACACAATTAGTAATCATCCTTCAGGAATTTTTCTGACATTCAGATTTTGTAAAAAAGTAATTCAG
CDS sequence (LotjaGi1g1v0525300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCCTAATTCCAGTTACCCTTACCCTTATTTTCCTTCTTCCTCATCTTCTTCTCCTTCACCATACCCTCCTTTCAA TTTCCTCAACCCTGGAAATGCTTCAACAAACAACATCTTCCTCCATGACCCTCCTCCTCTTCCTTCTGTCCCCTACACAA ACAACACCACCAACACTCACCACCACCATGCCCCTCCAACCTGCTCAGAAACCTTCACCAATTGGGCACTTGCAGATGCA ATGCTCAAGCAAGAAAACCTCACTGGTGGGCCCCACCATCACTACAACCTCTCCAACTTCCTCACCAGAAAACTACCAGC AGCAAAAAAACCAGCCAAGAAGGACAGGCACAGCAAGATTCACACCTCTCAGGGCTTGAGGGACAGGAGGGTGAGGCTTT CAATCGAGATCGCGCGAAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAATACCCTCGAGTGGCTC TTCAGCAAATCAAACAAAGCAATTGAAGAGCTTTTCAGAAGCAAGCATAGTGATAATAACAATAGCACTGGTGCTTGTGC TGCTGATGGTGATGGTGATGGTGATGATGACAGCTTCTCCTCTTCCTCTTCAGAAGATGAAGTTGTTTCTGTGAAAAGGG CACAGAAAGAAAAAGAACCTTCTGGTGTTCAAGCAAAGATGAAGGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAA AGGACTAGTAACAAGATGTGCCCTGAAACTGAAAATCCTCAAATGCAGCTTCACCAATTCAGTTCAGAGTTTCAGCCTCA TCAGGAACTGCATAGAGATGATGATTTCAAGGTTTTTGAGGAATCCATTGTGATCAAGAGGAAGTTGAAGCAATCATTGA TGTCTTCTTCTCATCATCACCAGAACCAAAACATTGGGATCCCTAAGGAAGCAAGTTTCAACAACAACAACAATAGTGAG TGTCCCTCTTCCTTCCCTATGTCTCCAAATTGGGATGCTAGTGGTGCCACTCCACGCTCAAACATTTGTGCAATAGCCAG CGTGAATCTCTCAACAGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCTCATCTACACTAA
Protein sequence (LotjaGi1g1v0525300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPNSSYPYPYFPSSSSSSPSPYPPFNFLNPGNASTNNIFLHDPPPLPSVPYTNNTTNTHHHHAPPTCSETFTNWALADA MLKQENLTGGPHHHYNLSNFLTRKLPAAKKPAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWL FSKSNKAIEELFRSKHSDNNNSTGACAADGDGDGDDDSFSSSSSEDEVVSVKRAQKEKEPSGVQAKMKESREKARARARE RTSNKMCPETENPQMQLHQFSSEFQPHQELHRDDDFKVFEESIVIKRKLKQSLMSSSHHHQNQNIGIPKEASFNNNNNSE CPSSFPMSPNWDASGATPRSNICAIASVNLSTGLQIFGKSWEECTSPHLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 22 | 365 | 344 | 1.5E-85 | – | |
| PANTHER | 22 | 365 | 344 | 1.5E-85 | ||
| Pfam | 112 | 247 | 136 | 1.1E-41 | ||
| ProSiteProfiles | 113 | 171 | 59 | 34.783 | ||
| MobiDBLite | 176 | 249 | 74 | - | – | |
| MobiDBLite | 209 | 246 | 38 | - | – | |
| ProSiteProfiles | 228 | 245 | 18 | 11.607 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi1g1v0525300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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