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LotjaGi6g1v0192100.1

Overview

Field Value
Gene ID LotjaGi6g1v0192100
Transcript ID LotjaGi6g1v0192100.1
Lotus japonicus genome version Gifu v1.2
Description Superoxide dismutase; TAIR: AT5G23310.1 Fe superoxide dismutase 3; Swiss-Prot: sp|Q9FMX0|SODF3_ARATH Superoxide dismutase [Fe] 3, chloroplastic; TrEMBL-Plants: tr|A0A151R579|A0A151R579_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0192100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:48842935..48849919) extracted from Lotus japonicus Gifu genome v1.2.

GTCTGGTTGAACTTTTGTTACGTTATCTTTTATTCACCGAAACAAGTCAGAGAAGAAGGTTGTGTTTCTTCAAGACATTG CTCCATTCTGTCTTCCTTTGAGAGAACAAGTTACCAACGTTGTTCTTCAACATCTTCAACTGCGTGGTTTTCAGCATCTT GTAACATTCTTTTCCCATTTCTGAATTTCCCTTCTGGTTTTTTTTTTTCCTTCACGAGCTTTTCATTTCTTCTATAGAAT GAAATGTGAAGTTCCTGAGTATGCCAAATGTTTGTTGAAATGCCTCAATGAATACCATCTCTCTGTTTTGTAAACATTGT TGTCCGTGCTTCGGGAACTGTTTCTCAAAGCTGTGTTGCTCTTGTTACTGTTATCATTCTACTATTATAGTTGTTGTTGT TGTTGTTTATCTTTTACTTTTAGGGATACATGATTTGGTGTTTATTCTAGTTATATGCTTAGCTTATTTGATTTTGGATG GAACATAGTATCTGCAAGCTAAAATTGATGTCATGCCTTCATGTGAATAGATGGGTCAAGGTTTGTTCAGTTGAATTCTC TTGTTTATATGTTGTTGCCCCATGTGGGAAAGGCATGAGTTTGGGTTTAATTTGGAGGTGGGTGGGCATTGGTTTTGCAT GAAGAGGGCATCATCAAGTTTATTTTCCACTTCGTCATTGTTTATCTAGAATTTGAAATTTTGACTTAGATAATTGATTT AGCAGAGTGAGAATCGGTGGTGATTGACTGAATTTGTTTTCTTAGGCCGTCTTAGCTGGGGCAGCTGTAATCTTATTTAT TTACATTCATTAAAGAGATTATTTGTATATGAAGTCCATTTTGATTTTAGCTGTTTAAGTGTTCATATTATTTCTATTGA TAGGGAAAGGACTTTATTTCTTTTCATTTCATACTCTTAAATTAATGTATTGTTTTCACTATTTGTTTCTGCCCTGAAAT CCTTATCCGACCATGGAATGAAAATGAATCTTTCTCCCCCAAATTCTACAGAATTGTATTTTCTACAGTTTGGGTTATAA TAGCTGTTTTCTGCAACACAATCAAATGCTACATATTGAATTGATTTGTTTATGAAAATGCTAGGGAACAAAGTCACAAT GGCTTGCTGTTACTTCAATCCTATACCTACTAGCTCTCATCCCATTTTGTCAGACTTATCTAGAAAGTTCAAGATTCCAA AGCTTCTTCACAGGGTAAATTTCTTTGATTGACATTCATTGTTTTGCTGATTAATTCCCGTATTAAAATTCGTAATTTCT GTAGCTTCCTTTTTCTAATAATATACATAATAACCATGAAAATGCATTGTACCCAAGATAAATTGTCTGCGTCTAGTTTT CTAGTGTCATATTTGTCTTTTGGTACTTTTGATAAATAGAGTTTCAGACACTAAACATATTTAATTTTGTTTGAAGACAT AGTGATATATTATTGCATTGAGCAATCTGGATCTTCTGCATGAAAATGTTTGAACTTAATTCTATTCTAGAAATGGAAAC ATATCAAATTACAATGTAATATCAAGAATTGCAAAGTTTCCATTGACTTGGGTGGGTTTCCACTTTCCAGTATTGAAATT CATTTCTGATTTTGAACATGAGTTTTATTCCTTCAAGGAAAGTAAAATGACTTATGGGGTTATAGGCAATAAGTGGGAAA TAGTGTGGCTCTGTAGTATTAGTTAGCGGTTACATGTAGACTGTGTGTGTTATCAGTTCTCTCTGTATTTTGTACAATAG GCTCATGACAACATGAAATGGTTATTGGGGTAGTATCACTCCTCAACATAGAAAATTCTGAAGAGTCTCTGAATGTTTAC TTCTATTGCACTTGAGCAAACTAAATGTAACCATTAACTTCCGTGGACTGCTTTTTGATTTCTACCAAACATTTCTTCTC TATGACAACTTACTTTTTGTTTTGTGCTGATGTGTTGTTTACCATCAATTGCATTTAAGCAGAACAGGAGGTTTAATGGC TCGCCTAGATCTTCAAAAGTTACTGCATTTTATGGCTTGAAAACCCCTCCTTATGAACTTGTAAGTGAACCATTTCATTA CCTGAATCCATGTTGTTTAGTGACAATTATACTGTTTTGGCATACATGCTTGTAGCTGAAGCAGGTTGTGCAGTAAAAAA GTTATCAGCAAAATAGTTGCATTCATAGGTTTAATTGTCATATATCATTTTATTTAAGCTTGTTAAAACAAGTCTATACC TATTGCTATTTTAGCCATTATAACAATCAAGAAAGAAACTAGAATTGAGAAAATTACTAGTAAATGCCAAAGGGATGACA TCATAGAAGGATGTTTTAACGACGGTCTTACTATTTATTGCATCTAGCCTTTCAACAAACTCTAAATTGTAACTGAAAAA AATTTATGCGAAAAATAAAGACCCCTTCTGAAAATATGTAGAAAATATCCTGCAATATCTTAGAATTCAAGACTTCCTTC TGAAAATATCTTTCTTGTATCTTATATGTTAGAGTACCCTAGATGGTGTTCTAGAAGTGGTTTCTAGACTACCTTATATT TCTTGATTTATTCCCTTTATGGATTCAGATTAGGAGTCTAGTACTACCATAAATAAGGGCTACTGCTTTCTCTTTTGTAT CACATTATTACACACCAAGATCATTATAACCTTATTATTCTTAGCATTCCTTTATTCCTCCTTCCTTACCTATGCCCTAT AATTTCTATACAACAACAATAACCAAGTCTTTTCCCACTAGATGGGGTTGACTACATGGATCACACGATGCCGTAAAACT TTGTTGTAGTAACTCCAAAGATAGATGTCCTATAATTTCAATATATTCAATTTTTTGTTAAGGTATCTATATCTTGGGTA AATTGGAAAAAAAGTACTAACACCATGTTAGAATTTCGAAAGACTAAGCGCCCATATGATAAATTCATAATTAGGAATCC TACAATCCTTTTGTGGCTCTTATAAATTCAATGCTCAGCATTACCCTCAGCAGCTACTGGTAGGCCCTTTATCATAACTC TTTTCTTACTTTATTTTCTGTTTTGATGCTCTTAGGATGCATTAGAACCATATATGAGTAAGAAGACAATTGACATGCAC TGGGGAGAACATCATCGGAATTTTGTAGAAGGTTTGAACAGACAGCTGGAGAAGGATGATATACTATATGGTCACACCTT GGATGAACTAGTCAAAGTGACTTACAACAATGGCAATCCCTTGCCTGAATTCAACAATGCAGCTGAGGTACTAATTAAAT TGATTGCTTACTGGATGTGATCATTTTAAGTTGATTAAGTCTCTAAGTCTGCTTGCTTGTTCATATTAAACTATTCAAAA TACTCTAGTGTATATTATTATATAGTAAATGAGAAATATAGTGTCTGAGTGTTCATAATTTTCCAAACTTGCATTTACCT CTTGACTTGCTTCAGAAATTACGTTCACTTGTAGTTGTCAGGAAAAAAAAAACGATGAAGTGGGCAGGTGGGAGTAATTT ACTAATTTAGGTAAATCTCAAATGGTAGTTTACTCTTTAGTAGGAACTTTGAACTATGTAAGATTATATCTATGAAGTAT AACCACTAAGCACGTGAGAAATGGACAGCTCCTTCATTCCTGAAGAAAATTCTCCCCCCTAAAGTTGGACTTCTATTTTG GCAAGCCTGTAATAACAAGATTGCGTCCAAACAGAATTTGGTGTCAAGAGGGGTCAGTTTCGCTGACAATGGTGCGTGTT CCCTGTGCCGTAATGAGATTGAGTCTTGTGAACATTTGTTTCTTCACTGCCCCTTCTCTTGGAAACTTTGGACTGACATA TCTTTGCGGGAGGGTGTTTCTTGGGTCATCCCAAGATCACTCTGCGATTTGGCTGCCGAGTGGGAAGAGTGTGCTATAAT CTCTGATTCAAAATTGTGTCTCTTATCCCTTATGCATTGGTCTGGTCCATTTGGCTCGAAAGGAATCAGGTGACCTTCAA AGATAAAGTATCCTGTGCTCAAGAGGTTTGGGATATCCATCTTTTGAGAATCAGTTGGTGGGTTAAAGCTATTTGGAAGG AGTGTCCCTATTCCTTGGATCAATTCTGTAGAATTTTTTGCCTCTTGTGCTTTAAAAAACCTGTGGACAAACAAAGATGG GCAGTTTGGGAACCACCAAGTAGAGGAGTCCTTAAATTCAACGTTGATGGGGCTTCCCAAGGCAACCCGGGGCCATGTGG AGTGGGGGGACTTATTAGAGACTATAGAAACTTGATTATGGGTTTCTTTTCCATTAACATGGGGCATGGGTGGGCTTTCG AAGCTGAAGTGAAAGCCATCCTAAAGGCCTTGCTATTTTGCCAGCAATTCAATCTCAAAGACTTGGTTATAGAGAGCGAC TCTACCATTGCTATTGGTTGGGTTAAATCTAAGAAGAATCGGCCTTGGAAGCTGCTGAATGACCTCAACCATATTGATCT CCTAATGGTTGAAGTTCACTGCTTGGGTATCTTTCACATATATCGGGAAGCAAACTTTTCTGCGGATTCCTTGGCAAAGG CGGGCTGCAACCGCGCTACGAATTTGTGGTGGCATTCAGAGGGAGTGCATTGAGCCCCATATTCTTTTTTTTGGGCTATT TTTCTGCTTACTTGTGCTGTCGTGTTTTTTTTTTCTCTTTGCCTGCAGGTCTTCTTATCTGGTTCCTTGTAGTATTTGTA GCTTTGCTTTCCCTTGCCTTTTTGTTTTGTTCGTTATTCCTACTGTACTGTTGGGGTTTTTCCCCTCTTTTTGTAATCTC TTGCTGGCTTTGTCCAGCCTATCTTTATATATATATATATATATATATATATATATATATATATATATATATATTATCTG TCTTCTCAAAAAAAAAATAACCACTAAGCACGTGGATCAAGGTGATGTACACTTGGTGAGCACATATTGAGACCTCAGGT CATGATCAGAAAACTTGCACCTGAGACTCTTCTGGAGACCATAAAGTATTAAATATATCAAACTCTAAGTTCAAAACTAA ATCAATGTAAATTGGAAGCTGAAATAAATTAATAATCTTTCTTCTTGTGGCTCTTTTGCGCCAGTTCCTATTTCTACTTG TCTTTTAGTAAACGTTTGTTCCTCCTCTCTCTTGTAGTCTTTTTTTTTAAATGTTTATTTGCCTGTTTGCATTTTCTCTA GTCTGCGTCAAAATAGAACTTGTCTGCCCTATCTGTGTGATGAAGCTAATCTTGTCTGTTCATCATAATAGTAAAATTAC GATTGTGGCTGCTATGTGCTTTTATGTTTTAATACTGCCTAACCTGATTAACCTCCCCCCTTCCTCACAGGTTTGGAATC ATGACTTCTTTTGGGAATCCATGCAACCAGGAGGGGGAGATATGCCCATACTAGGTCTTCTTGAACAGATTGAAAAGGAT TTTGGATCATTTACAAATTTTAAGGAGAAGTTTATAGAAGCTGCCCTCACATTATTTGGTTCTGGCTGGGTTTGGCTAGT CTGTAAGTCCATTCCTAATTGATTCCTCCTCTGCTCCCAATCCTATTAAAATAAGAACAACCAATTTAAGTATCTAAACT AAATATAAGATTTAAATATAAGAACGTCAATTTTGTTTTTCTGGTTGTGGAAATGGTTTCTCATTGCTTTTATTCATTGA GAATTAATATTTTATCTGAGGCAGTTAACTACTAAATGCTCTTTGGCTGGTTCAATTCCAGAATATGTGCATTGTCAGAC CAGTTGTCTGTTGGGTATACCTATGCTAACATAAATTGTCTTAGTTTAACGTTAATTGTTTGATCTTTTGCTTTAATAAT GGTGGGTTGTTGCTAATATTCATCGATTGTACCAGTGAAGAGAGAAGAAAGACGACTAGCCATTGTTAAAACTTCAAATG CCATTTGCCCTACTGTGTGGGATGACATAGTAAGTCCATTTCCTCTTTCCTCCATAATTTTTGTTTGATTTAATATTGGA CATGGAGTTGATCATCTTTTCTCATGCAGCCAATCATCAACTTGGATTTGTGGGAGGTATGACCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTGTGTGTGTATATATATATATATATATCAACTCAAACCAAAACAAGTAGATTCATATGCAAATT ACATAACAAGAAATAACATTTATGTAGTAATCAATAGCTCATTACTGACTATCGCTTTACTTTATTGCAGCATGCATACT ATCTGGATTACAAGGTATGTAACTACTATCATAATCAACACTTATTTTCCACAAACATTTGCCTAACAATCCTTGTGCCA ATTTTGGGCAGAATGACAGAGCAAAGTATGTGAATGTATTTATGGACCACCTTGTGTCTTGGAATGCTGCAACTGAACGC TTGGCATGGGGAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGAAATATTGAAAAGGGTAATGATTA CAGTACCGGAAATGGACATATGGTATCTTGAATGGATGTAGAAAACTCAAAGGCTTCATGTCAGAGTTTGATCATATGGC CTGAAAGGATCTGGTGGGTTTCTGTCATATTTCACTACAACATTCATAGTGCCCCAGGTGCTTCTTTCTGGCTGTATATT TTTATTGTAATAGTCTAGGACTGAGAACAACTCGTCATATGGAAGGATCTAGTAAAATTTAGAGCAGGATGCAAAGGTTT TCAATGTATAATGAGAGAGAAAAACAAGAATGTTCTTTGACTTTTAGTCCCATTGTATGAAAGTATTAGTGTAAGGAAAT TGCAAGTGTGAAACTAGAAACTAGAAAAGATGGATATAACACGAGACATTGATATTTGCATGTTTTAACACCCTAATGAA TTGATTCTAAAGTCATAATTAATTTTGGGTTGTAACTTATGTGAGCTTTCTAAGTATCAAAATTGATTTTGACGAAAAAT AAATTGTCAAAATTGACTATTCGAC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0192100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTGCTGTTACTTCAATCCTATACCTACTAGCTCTCATCCCATTTTGTCAGACTTATCTAGAAAGTTCAAGATTCC AAAGCTTCTTCACAGGAACAGGAGGTTTAATGGCTCGCCTAGATCTTCAAAAGTTACTGCATTTTATGGCTTGAAAACCC CTCCTTATGAACTTGATGCATTAGAACCATATATGAGTAAGAAGACAATTGACATGCACTGGGGAGAACATCATCGGAAT TTTGTAGAAGGTTTGAACAGACAGCTGGAGAAGGATGATATACTATATGGTCACACCTTGGATGAACTAGTCAAAGTGAC TTACAACAATGGCAATCCCTTGCCTGAATTCAACAATGCAGCTGAGGTTTGGAATCATGACTTCTTTTGGGAATCCATGC AACCAGGAGGGGGAGATATGCCCATACTAGGTCTTCTTGAACAGATTGAAAAGGATTTTGGATCATTTACAAATTTTAAG GAGAAGTTTATAGAAGCTGCCCTCACATTATTTGGTTCTGGCTGGGTTTGGCTAGTCTTGAAGAGAGAAGAAAGACGACT AGCCATTGTTAAAACTTCAAATGCCATTTGCCCTACTGTGTGGGATGACATACCAATCATCAACTTGGATTTGTGGGAGC ATGCATACTATCTGGATTACAAGAATGACAGAGCAAAGTATGTGAATGTATTTATGGACCACCTTGTGTCTTGGAATGCT GCAACTGAACGCTTGGCATGGGGAGAGGCTTTTGTGAACTTAGGAGAACCTAAAATTCCTGTTGCATGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0192100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MACCYFNPIPTSSHPILSDLSRKFKIPKLLHRNRRFNGSPRSSKVTAFYGLKTPPYELDALEPYMSKKTIDMHWGEHHRN FVEGLNRQLEKDDILYGHTLDELVKVTYNNGNPLPEFNNAAEVWNHDFFWESMQPGGGDMPILGLLEQIEKDFGSFTNFK EKFIEAALTLFGSGWVWLVLKREERRLAIVKTSNAICPTVWDDIPIINLDLWEHAYYLDYKNDRAKYVNVFMDHLVSWNA ATERLAWGEAFVNLGEPKIPVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 162 162 - –
PANTHER
PTHR42769
29 262 234 2.9E-138 –
PANTHER
PTHR42769:SF10
29 262 234 2.9E-138 –
SUPERFAMILY
SSF46609
46 135 90 2.62E-27
IPR036324
Pfam
PF00081
49 134 86 1.7E-20
IPR019831
PRINTS
PR01703
52 63 12 1.7E-17
IPR001189
Gene3D
G3DSA:1.10.287.990
66 133 68 2.3E-16
IPR036324
PRINTS
PR01703
73 86 14 1.7E-17
IPR001189
PRINTS
PR01703
117 130 14 1.7E-17
IPR001189
SUPERFAMILY
SSF54719
137 246 110 4.45E-40
IPR036314
Gene3D
G3DSA:2.40.500.20
141 255 115 4.8E-42
IPR036314
Pfam
PF02777
145 244 100 8.1E-35
IPR019832
Phobius
TRANSMEMBRANE
163 180 18 - –
PRINTS
PR01703
170 178 9 1.7E-17
IPR001189
Phobius
CYTOPLASMIC_DOMAIN
181 262 82 - –
PRINTS
PR01703
208 220 13 1.7E-17
IPR001189
ProSitePatterns
PS00088
210 217 8 -
IPR019833

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004784
Molecular function Superoxide dismutase activity Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
Subterm of
GO:0006801
Biological process Superoxide metabolic process The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0192100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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