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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020549
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.602s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0295639.1
n.a. Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1| chr0 153593023 153601407 +
2 domain predictions
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Lj3g3v3752170.1
n.a. PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356531716|ref|XP_003534422.1| chr3 45378276 45381725 -
2 domain predictions
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Lj5g3v1222610.1
n.a. PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356535300|ref|XP_003536185.1| chr5 19908165 19913353 +
2 domain predictions
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Lj5g3v1222610.2
n.a. PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356535300|ref|XP_003536185.1| chr5 19909822 19913353 +
2 domain predictions
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LotjaGi1g1v0222600.1
n.a. Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|I1M9Z5|I1M9Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222600 LjG1.1_chr1 49598785 49608740 +
2 domain predictions
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LotjaGi1g1v0222600.2
n.a. Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|A0A0B2SRP5|A0A0B2SRP5_GLYSO Putative rRNA maturation factor; Found in the gene: LotjaGi1g1v0222600 LjG1.1_chr1 49598933 49607380 +
2 domain predictions
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LotjaGi3g1v0555100.1
n.a. PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|A0A151TNX9|A0A151TNX9_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0555100 LjG1.1_chr3 97269032 97276861 -
2 domain predictions
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LotjaGi5g1v0196300.1
n.a. PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|V7BEA4|V7BEA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0196300 LjG1.1_chr5 49194357 49205708 +
2 domain predictions
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