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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0295639 |
| Transcript ID | Lj0g3v0295639.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 89 | 267 | 179 | 21.283 | ||
| Gene3D | 144 | 271 | 128 | 1.60E-42 | ||
| SUPERFAMILY | 147 | 263 | 117 | 1.06E-35 | – | |
| Pfam | 148 | 257 | 110 | 1.10E-32 | ||
| TIGRFAM | 152 | 258 | 107 | 1.40E-30 | ||
| ProSitePatterns | 227 | 237 | 11 | – | ||
| PANTHER | 232 | 571 | 340 | 1.30E-155 | – | |
| PANTHER | 232 | 571 | 340 | 1.30E-155 | – | |
| Gene3D | 294 | 373 | 80 | 5.50E-47 | ||
| SUPERFAMILY | 295 | 569 | 275 | 5.90E-57 | ||
| ProSitePatterns | 301 | 312 | 12 | – | ||
| TIGRFAM | 301 | 566 | 266 | 3.80E-48 | ||
| TIGRFAM | 301 | 538 | 238 | 2.50E-21 | ||
| Pfam | 302 | 566 | 265 | 8.90E-50 | ||
| SFLD | 302 | 570 | 269 | 0 | – | |
| CDD | 302 | 398 | 97 | 1.34E-11 | – | |
| Gene3D | 389 | 484 | 96 | 1.70E-04 | – | |
| Gene3D | 485 | 569 | 85 | 5.50E-47 | ||
| ProSitePatterns | 520 | 542 | 23 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of Lj0g3v0295639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0295639.1, powered by CORGI.
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