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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0555100 |
| Transcript ID | LotjaGi3g1v0555100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|A0A151TNX9|A0A151TNX9_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0555100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:97269032..97276861) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATCTTTAAGTTTTAAATAACAAAAAAAGTTTTATAAAACTCTCAAATGTATCTCTAATAGGTCTTATATTTAAGG ATAGAGTAATTTGTAAGATTGTTTTTATTTTTAAATATTTGTAAGATTGTTAGAATATACATAACATATCAAGGTTTCCT CTCTTTTTTTTAAGAGAAAGGTTATTGTTAAGATTCTACTATTATTGATAAAATTGATATCGTATAATTCAGATTTCAGA TATTGTTTAAAGACAAAAAAGTATCAGACGATACAAAATCCACCCCTGACCCCACCGTCATTAAAAAAATCATATACAAC TAATTTTTATCTTTTAATCTTATTGTTGAGTAAATTGTAAAACTTGTTTATATATATATATATATATGTTGTTCACTGTA TAGTTATCTATAAACCTGAATTAGATAACTTAAATTAAGAAAAAATTGGCAACACACACACGGCTACTGAAGTTAAAAAA GGCAGTTGAGAGAGAAAAGGAAAAGGAACCGGCATAAAAAGAGGCGAATTGACAATAATGCCATGGCTAGCACTGAATAT ATACAAAAAACAAACAAACCCTAACCACTAGCACCTTCTTCTCCACACCGCCGTCACGTCGATTTGCTTCTGCTTTTCTT TCGCGCCCACACACACAGTCACCTTCAGATCTATCTATTCCCCCCTAATCGTTACTCGATCATCGATTTAACTTAAGATC AAGCCATGGTGGTTAACGAGAGACCCTCCAAGAGGATGAAGCGGAGGGTCACCGCCGATCTCTATGATTTCCTCTCCTTT CCCTCCGCCGGCGATGTCTCCCCCGCCGCCGTGCCCTTCCGGAACCGCATTCAGCGCTTCCTCTCCGACCATGCACGCGT CACTTTCCCTCCCTCCCTCTTTCCCGCTCTCATGACGTGGCAAATCTTGTTCCGTGTCGGAGAACTCGTCGATGGCCCTG ATCTCTCGCCGGCCATGGTTGCCCTCGACATTGTTGAGGAGGACGTCACCCGTTCCCGTACTTCTGTCTACTGTGACCAG TGCAGAGTCGTTGGTGAGTCGAATCGCTGAGTCTCAAACTCGAGTCGAGTCATAGTTGAATACACTGACTCAGGACGTAA AAAATAAAAGACACCATTTTTGTTTGTCTTTCTATAATTTTTATTTTTATTTTTATTGTGTCTTTACAATAAAATATGTG TTTTACTTTTCCTAAATAATATTTATTATGACGTGGGTGTGTTAAAAAGGATGGAAATTTAGGCATAGATAGATGAGTGG ATATAGATAGAAGTTGATAACCTTTGATGTGTTGTTTGGTGGATATAGATAGCTGAGTTCTAATACTCTTGACTTTTTGT TTATAAAACTTTAAAAATAAAGGGTGGAGTGGTCATCCAGTGTGTCGAAAGCGATACCATTTCATAATTCGGGCTGCAAG TGATGCTGTCGAAGGATATCAAAGACCTTGTTCAAGATGCGGAAGTCTTCTCCAGCTATCTGAACCAAGGTGGTATTTAA CTTTCAGCTCTCTTATTTATTTTTCCCAAGGAAAAAAGAGGGTCTCAAAGATAGAGGCTATTTATGCAATGTGATGGAAT TGAGAGAGCTTATGTTAGATAATTTGAGTGTATGTGAGGTATTGGTGTTGTTTGAGTGTAAAAAATTAGGATTGTTTTTT TTTTGAATGTGCATTACTTACTTTATTCGGTTATTTGACATCCTGGCAGGTGTAAATCGTGTAACTTTGCCATTACTGCT GATGATCTTGAGGAATGGGTGTATCTTCAAATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCACGCCAATGGCTA TGGTCACCTGCTTACTCTTAATGGAAGAGAAGGTGGCGCGGAGCTTCTCTCTGGAGCTGATATTATGGGTTTCTGGGATA GGCTATGTGCTGCAATTTCTGTCAGGTTTGAGTCCTTCAACTATCTCACATATTTACTTTGTCATTGTGTCTTTGCCTTA TTGATGCTGTGAATTCTGGTGAGCAGGAAGGTGAGCGTGATGGATTTGTCCAAGAAATTTGGACTGGAATATCGATTGCT TCATGCAATCACCAAGGGACATTCCTGGTATGGCAATTGGAATTATGAATTTGGGACTGGCAGCTATGCTCTCACCCATG ATACATACAAGAAAGCAGTAAAGACCTTGTCAAGCATGCCCTTGTCCTCATTTATATTCCAGCACCGAGGGCCGCCAAAC CGCCTGCAGTGTGTCATTTCTCTTTACCAGTCTCTGGCAGATACTGAACTTTTAACAATTAAAGATCTCTTCTCCTTTTT GTTGGCATTGATTCATGGATTTCGTAAACCCATGGCTGTGAGCACATCTAAACAGCTTGAAGACACCAGTACATGCAATA CATTGTGTGCTTGGATGAGAAATGATGTTGAAGATGTGCAACAGGCTTTGATCAAGGTATTGCTTGCATCGGGGGCATAT AGTGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAAGGTGCAGTATGCAGGGGGGTTGCATCTCCAGAGCTTTTAGATTA CTGTCTCAAGCACTTCCAAGGGAAATTAGCTGCCAATGGAATGGTGGTTTGTTCACGATGCAATCCTGTTTCTAGTGCTA TTGAATACAGGTAAAAAAGTCAAGATTGTGCCTTTTTCAATTGCTTCTATTCCAGCGCAACTAATGCTTGTATTATATGT CCAATACAAACAGGCTAGAACTTCTGAGTAATGCATTTATAGCAAATTCAAGCTCTCCCTCAGAAGAGCAAGTGATCTCT GATTTGACATTCTTATTCAATTCAATCATTCACCCTGACAAAATGGTGAGCTACAGGCCTAAGGATTTGAGGAAAAGGGT GACTGATTCAGCCAGGACGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCTTGATCAGATGACTGAAGAACTGC CTTCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAAGATGACCCATCCCCACCTCTAGAGCTGATT GTGTTGCCTTTGAATGCTACTGTTGCTGACCTCAAGAACGAAGTCACCAGTGCTTTCCAAGAGGTTTATGCAATGTATAA AAGGTTTCAAGCCGAGGAGCTCCTGGGATATGGGTCAGTAAGTGATTCCCTCACAGTAAAATTCCTGTTTGGAACAAGTG GGTCAGTCCAAATTCGAGGTAGATGCCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGTGGAACAGAAGTGTGG AAAGTTGATTGCACTTGCGGGGCAAAGGATGATGATGGAGAAAGAATGCTAGAATGTGATACTTGTGGTGTTTGGCTGCA TACTAGATGCGCGGGTGTTGATAATTCTAATGGCATGCCTTCCAAGTTTGTATGTATAAGATGTGTGATCTCATACCGTG AGGAAACTGAAAAGATGCCAGAGTCTGGTGGCAAGGCTGATGAGGCTTGTAAATTGAACATATATTGCAGAGATGAAGCA GTGGGAACAGATTGTGCAGCAGTTTCCTGCAACATAGCTGTGAATTTTGGTGTGCGTTGAGTGTATATAGCTTTTGTATC TATCTGTATATAGATTTTGTCCCTGAAGGATGCTCAAAGTGTTAAGAGCTAATGGGACAGGGTTCTGAGATAGTGAGAAT TGATTCCTACAGAGGATAAAATTCCTTAGAAAAAAAAAGAAAAAAAATGGCTGATTAAAAAGAGGTATTAGGGCTGGTTG TCTTCCCCTTGGATTTTATCATATGGGCCTAGAGGTTGTGAACTTTATGAAACCTCATTTTTGGAGATGCTAAGCTCTTT TGTCATTTTACCTGATCATATCGAGCTCAAAGAAGAAATATGTATTGACCATGATACTTGTTTTTCATATTTTCTCTTTA AGGCTTTTTTATGTATTGCAATTACTTATAGTAACATCTGGTAAAATCCAGATCACCAGTTAAGCCACTTATAAAAATCG CCTATATGTAGAAACCCATTGGGTTCTCAATAACACAATTCTCTATCCAATCAATAGCTTTGCTATGGAAAATACATTTA CCAATATGATCCTCGTAGAGGACTTTACAATCATACTCGAGCAACAAATAAATCAAACAAGCGATAATTTAAAAAGTGTT GAACTAACCTCCGGTTGCTACACCTTAGTCATACATTTACTTCGGAGGACACATTTGAACAATGATAATTCGCTTGTTAA TTCACCAACCAATTTGCTGCTTGCACACTCCTCAAATTTGATTTCTCATTCACTGAAAGTAATTCATCTTTATTAGATTT GTGAAATGATATGCAGCAGCCTCTGAGAGGAGTTTTGCTCGCTGGAATCACTCCTCCCCCAAACACACACACACAAAAGG TATTCCTAATAGCTTCTCCTAGAATAGTTTCTCCCCCCCCCCCCACCCCAATGTGGAAACCTATGGCTATGGGGTTTCAT GTTATATATTTCTCTAATTTCTCAAGATATAACACATGGGGAAATATAACACATAGGTAGATGAATTCTGATAAAAAAAA AGAGAGTAGACAGCCAATATCAACTAAGACAGCATTACCCAAACAACTTTGCTTAAAGCAGCTATAGACATTCTACTACA AATATAATTAGGGGTCTAAAATAGTTGTACAAATATAAAAATACCAATACCATCATGACTACAAATTAAGTCTCTAGATC CTCATGTGAAGTAACAAGTCCGGGAGGATAATTTATGGCATGTTTGGGTCCATGGCTAAACTTTCCATAATCACTCCTCC CCACCCCCAAACACAAACACACACACACACACAAAAGGTATTCCTAAGGGCTTCTACTAGAATGACTTTGCTATAACAGT AGGAGAATCCTTATTGGAGACAACCAAATTCTGACTTGTAACTGAAATATAATATTATTAGAGAAGAATGTTCTCTAGAA GAATTGCAAATTGGTCTCCAATAGCCAGCCATCAAATCCTACTTCTCCCGAAAACTAATCCTAATAGAGGTCTAGCCACC TCTATTTATGCTAAACCAAATAAAATAAGAAAAGTATATTAACCCAAATAAACTATTCAAATATAATAATAAAATAGAGA AACCCAAGGTTGTTTGGCTACTAACGCACACCATCAAATGAGGACGTATTGTGGCGCCTCCTATAGAACTTAGTAATAGG AAATTTAGGTCTAATCCTATCAAATTTCTCCCACCAATGTGGAAACCTATGGTGTTTGATGTCATATATTTCTCTAATTC TCAAGATATAACACATGGGTAACTATAACACATAGGTACATGACTTCTGATAAAAAAAAATGAGAGTAGACAGCTAATAT CAACTAAGACAACATTACCAAAGAACTTTGCTTGAGGCAGCTACAGACATTCTACTACAAATTTAATTAGGGTCTGAAAT AGTTGTACAAAAAAAAAATACCAATACCATCATTACTACAAATTATTCTCTAGATCCTCACGTGAAGTAACAAGTCCGGG AGAATAATTTATAGACTGGGTCCATGGTTAAACTTTCCAAAATCACCCCCCCCCCCCCCTCCAGCAACAAACCCAAAAGC TAATCCTAAAAGTTTCTGCTAGAAACATCCCCTCATGTAGAATCCTATTGGGTTTCCAATCACATTTGTATATTTCTCTA ATATCTCAACATATGGGTTAATATAACATATAACACTCGGTAGATGAATGTTTGATAAAAATATTAGAGTAGATAGCCAA TACCAACTAAGACAGCATTACCAAAAAACTTTGCTTAAAGCAATAGACATTCTACTACAAATTTAGGGTCTAAAATATTG GTACAAATAAAAAAATGAAAAAATATAACACACAGGTAAATGAATGTTTGATAAGAAAAATGAGAGTAGATAGCCAATAT CAACTATGACAGCATTATCAAAATAACTTTGCTTAAAGCAGCTATAGACATTCTTCTACAAATGTAATTAGGTTCTAAAA TAGTTGTATAAAAAGAAAATACCAATACCATCAGTCCATCATTAGTTTTAGAACTTATAAACCACAATATCTGGTTCAAC TTTTGCTTGTTTCTGATAGATGGGGAAGCAATTATAAAGTTGTATCTTTCTGAACAAGTAATCACACATAAAGAACAATT AGCCATATTATAATGAACATATTACTGTGAGTGCCAATGACATGAAATGGGACAGGAAAGGCCTTACTGACAATATAACT CATTTTCCACTGAACCACTTACAAAGATGACTTCATTAAAAATAAAAAGATACCAAGGATAGCACACACAATCATGTAAT AGGCAGTGCATTTACCTCAATTGCAGAGTCGATCTCTTCATCAGTGGCAAATGGCTGCACTGGATTATCTAAAATTGCAG TATCTGATGCCTTGAAGAAATCTCGCAATCTTTTCCCATCACTTTCAGTACTGGGTGGATAAACTAGAACCTAAGCAATG AAGCTAGAAAATCATTTGTCAGAAAAGGAAAACAGTGTTCAGAAGCATCCACAGAAATAAACAAGATCACAAACCAAGCG CATCCTAACAAAATATATCTGATAAAGTTTTTCCATGAAAATGGTTATTCTCAAAGCTTGTAGGAAATTATAAATTCGAT TCAACAATAAAGAGAAGATGAATGTGTATTTTAATTTTCAAGGCTGACCACATCCAATCAACTTCATTAAAGTTCAAGAC GTCTTTAAAATTTTCCACGGCACCTTATTGTGCAGATTACTTGTCCATAATAATGGCAAAATTGTTTCCAGAAAAATAGA ATGCCTAAAAATGCAACAAACACGTGTGCGTTTATGTTTCTGTTGAAGTCAAAGCCGATCCACGGCTCCACGCTGAAGTC AATGTGTCGAATTCTTGTTTTTACATCAATGCAAAAAACAAGTATACATGTTAACTTGCGTCGCAACTTTTTACAAATTA TTTACAGCTGATTGTTTCACCAAATGAAAAGTAGAATGCCTAAAAATGCAACAAACACGTGTGCGTTTACATTTCCGTTG AAGTCAACGCCGACCGACGACTCCACATTGAAGTCAATGTGTTGAATTCTAGTCTTCACATCAATGCAAAAACAAATATA CCGGAAAACTGGCGGCGCAGGTTTTTAAAAATGATTTACAACGGATTGGTTCACCAAATTAACAATCGCGCGCGAAAGGA GAAACAGCTACTAATATTTTGAACTAGATAGAAAGGAAAATGAAAAGAATAATGAGAGTAGTAAAAGGCATCTTGATGCA GAGCAGTGTAACAGAACATTGTCTAAAATAGAGGTATGCGTTATTAAGGGATAGATGCAGAGGTAAGCTTACTTAGTGGT TAGGGTTGGAGAAATCTCCGGTCCTTTGCGATCCTGCGATAATGAAATTGAAAGAAACAGGTAATGAATGCAAGTAAAGT AAAATTCGGTGTGTGATCTGATGAATTAAAACCTAGATCAAGTGAATGTAACTAAAATTGAATTCTATGAATGTATCTGC GATATTGTTAATAAGAGCGATATGCGATCGCATTGATCGAAACTGAATGAATAAAAGTAGAAAACAGGAGATAACGCTTA CATGATTGAGATTGATTTGATCGGAAGGAAAGTGGAGATACGAATCCGAGTGAATTGAATCAAACGGGACGAAGACGAAG ACGAAGACGACATTGGTATTCGTTGATCTCTTCCTCCTTCTCCTCCAGGCTCCAACCTAACTCGTGTTTTCAGTGAAAGG GAAAATACCTAACTCTTGTTTAACATTCCCAATCACATTATCGCGAGATACATACATCACATGCTCCTCC
CDS sequence (LotjaGi3g1v0555100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGTTAACGAGAGACCCTCCAAGAGGATGAAGCGGAGGGTCACCGCCGATCTCTATGATTTCCTCTCCTTTCCCTC CGCCGGCGATGTCTCCCCCGCCGCCGTGCCCTTCCGGAACCGCATTCAGCGCTTCCTCTCCGACCATGCACGCGTCACTT TCCCTCCCTCCCTCTTTCCCGCTCTCATGACGTGGCAAATCTTGTTCCGTGTCGGAGAACTCGTCGATGGCCCTGATCTC TCGCCGGCCATGGTTGCCCTCGACATTGTTGAGGAGGACGTCACCCGTTCCCGTACTTCTGTCTACTGTGACCAGTGCAG AGTCGTTGGGTGGAGTGGTCATCCAGTGTGTCGAAAGCGATACCATTTCATAATTCGGGCTGCAAGTGATGCTGTCGAAG GATATCAAAGACCTTGTTCAAGATGCGGAAGTCTTCTCCAGCTATCTGAACCAAGGTGTAAATCGTGTAACTTTGCCATT ACTGCTGATGATCTTGAGGAATGGGTGTATCTTCAAATTGAAGATAACACCCATCTTCTGCATGGTGTTGTCCACGCCAA TGGCTATGGTCACCTGCTTACTCTTAATGGAAGAGAAGGTGGCGCGGAGCTTCTCTCTGGAGCTGATATTATGGGTTTCT GGGATAGGCTATGTGCTGCAATTTCTGTCAGGAAGGTGAGCGTGATGGATTTGTCCAAGAAATTTGGACTGGAATATCGA TTGCTTCATGCAATCACCAAGGGACATTCCTGGTATGGCAATTGGAATTATGAATTTGGGACTGGCAGCTATGCTCTCAC CCATGATACATACAAGAAAGCAGTAAAGACCTTGTCAAGCATGCCCTTGTCCTCATTTATATTCCAGCACCGAGGGCCGC CAAACCGCCTGCAGTGTGTCATTTCTCTTTACCAGTCTCTGGCAGATACTGAACTTTTAACAATTAAAGATCTCTTCTCC TTTTTGTTGGCATTGATTCATGGATTTCGTAAACCCATGGCTGTGAGCACATCTAAACAGCTTGAAGACACCAGTACATG CAATACATTGTGTGCTTGGATGAGAAATGATGTTGAAGATGTGCAACAGGCTTTGATCAAGGTATTGCTTGCATCGGGGG CATATAGTGAGGCCAAATGGGTGACAAGGCGTGCTCTCAAAGGTGCAGTATGCAGGGGGGTTGCATCTCCAGAGCTTTTA GATTACTGTCTCAAGCACTTCCAAGGGAAATTAGCTGCCAATGGAATGGTGGTTTGTTCACGATGCAATCCTGTTTCTAG TGCTATTGAATACAGGCTAGAACTTCTGAGTAATGCATTTATAGCAAATTCAAGCTCTCCCTCAGAAGAGCAAGTGATCT CTGATTTGACATTCTTATTCAATTCAATCATTCACCCTGACAAAATGGTGAGCTACAGGCCTAAGGATTTGAGGAAAAGG GTGACTGATTCAGCCAGGACGCTCCTTGACTGTAAGCAGTTTATGAAGGATTACAAGCTTGATCAGATGACTGAAGAACT GCCTTCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAAGATGACCCATCCCCACCTCTAGAGCTGA TTGTGTTGCCTTTGAATGCTACTGTTGCTGACCTCAAGAACGAAGTCACCAGTGCTTTCCAAGAGGTTTATGCAATGTAT AAAAGGTTTCAAGCCGAGGAGCTCCTGGGATATGGGTCAGTAAGTGATTCCCTCACAGTAAAATTCCTGTTTGGAACAAG TGGGTCAGTCCAAATTCGAGGTAGATGCCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGTGGAACAGAAGTGT GGAAAGTTGATTGCACTTGCGGGGCAAAGGATGATGATGGAGAAAGAATGCTAGAATGTGATACTTGTGGTGTTTGGCTG CATACTAGATGCGCGGGTGTTGATAATTCTAATGGCATGCCTTCCAAGTTTGTATGTATAAGATGTGTGATCTCATACCG TGAGGAAACTGAAAAGATGCCAGAGTCTGGTGGCAAGGCTGATGAGGCTTGTAAATTGAACATATATTGCAGAGATGAAG CAGTGGGAACAGATTGTGCAGCAGTTTCCTGCAACATAGCTGTGAATTTTGGTGTGCGTTGA
Protein sequence (LotjaGi3g1v0555100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVNERPSKRMKRRVTADLYDFLSFPSAGDVSPAAVPFRNRIQRFLSDHARVTFPPSLFPALMTWQILFRVGELVDGPDL SPAMVALDIVEEDVTRSRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEGYQRPCSRCGSLLQLSEPRCKSCNFAI TADDLEEWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGAELLSGADIMGFWDRLCAAISVRKVSVMDLSKKFGLEYR LLHAITKGHSWYGNWNYEFGTGSYALTHDTYKKAVKTLSSMPLSSFIFQHRGPPNRLQCVISLYQSLADTELLTIKDLFS FLLALIHGFRKPMAVSTSKQLEDTSTCNTLCAWMRNDVEDVQQALIKVLLASGAYSEAKWVTRRALKGAVCRGVASPELL DYCLKHFQGKLAANGMVVCSRCNPVSSAIEYRLELLSNAFIANSSSPSEEQVISDLTFLFNSIIHPDKMVSYRPKDLRKR VTDSARTLLDCKQFMKDYKLDQMTEELPSVIRLWCHVELSDQPKDDPSPPLELIVLPLNATVADLKNEVTSAFQEVYAMY KRFQAEELLGYGSVSDSLTVKFLFGTSGSVQIRGRCPAKHGLSRFRMERGTEVWKVDCTCGAKDDDGERMLECDTCGVWL HTRCAGVDNSNGMPSKFVCIRCVISYREETEKMPESGGKADEACKLNIYCRDEAVGTDCAAVSCNIAVNFGVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 685 | 682 | 0.0 | – | |
| PANTHER | 4 | 685 | 682 | 0.0 | – | |
| ProSitePatterns | 181 | 191 | 11 | - | ||
| Gene3D | 602 | 669 | 68 | 6.4E-21 | ||
| SUPERFAMILY | 607 | 665 | 59 | 6.42E-14 | ||
| CDD | 617 | 662 | 46 | 2.46092E-20 | – | |
| SMART | 617 | 663 | 47 | 1.3E-6 | ||
| ProSitePatterns | 618 | 662 | 45 | - | ||
| Pfam | 618 | 663 | 46 | 1.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0555100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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