Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR020549 is a Endoribonuclease YbeY, conserved site.
<p>YbeY is a single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. It acts together with the RNase R to eliminate defective 70S ribosomes, but not properly matured 70S ribosomes or individual subunits, by a process mediated specifically by the 30S ribosomal subunit. It is involved in the processing of 16S, 23S and 5S rRNAs, with a particularly strong effect on maturation at both the 5'-and 3'-ends of 16S rRNA as well as maturation of the 5'-end of 23S and 5S rRNAs [[cite:PUB00064741], [cite:PUB00064742], [cite:PUB00064743], [cite:PUB00038326]].</p> <p>YbeY contains a conserved region with three histidines at the C terminus. This entry represents this region.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Haloacid dehalogenase-like hydrolase family protein isoform 2 [Theobroma cacao] gi|508782554|gb|EOY29810.1| | 24 | ||
| – | PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356531716|ref|XP_003534422.1| | 15 | ||
| – | PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356535300|ref|XP_003536185.1| | 13 | ||
| – | PREDICTED: PHD finger protein At1g33420-like [Glycine max] gi|356535300|ref|XP_003536185.1| | 13 | ||
| – | Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|I1M9Z5|I1M9Z5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0222600 | 26 | ||
| – | Endoribonuclease YbeY; TAIR: AT2G25870.1 haloacid dehalogenase-like hydrolase family protein; Swiss-Prot: sp|Q5XD45|Y533_STRP6 Putative phosphatase M6_Spy0533; TrEMBL-Plants: tr|A0A0B2SRP5|A0A0B2SRP5_GLYSO Putative rRNA maturation factor; Found in the gene: LotjaGi1g1v0222600 | 26 | ||
| – | PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|A0A151TNX9|A0A151TNX9_CAJCA PHD finger protein family; Found in the gene: LotjaGi3g1v0555100 | 15 | ||
| – | PHD finger protein family; TAIR: AT1G33420.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|Q9C810|Y1342_ARATH PHD finger protein At1g33420; TrEMBL-Plants: tr|V7BEA4|V7BEA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0196300 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd15556 | CDD | 1 | 12.50 |