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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023170
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.436s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0134359.1
n.a. PREDICTED: N-glycosylase/DNA lyase OGG1-like isoform X1 [Cicer arietinum] gi|502135915|ref|XP_004502497.1| chr0 61540113 61542424 +
2 domain predictions
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Lj1g3v4695520.1
n.a. PREDICTED: protein ROS1-like [Glycine max] gi|356503779|ref|XP_003520681.1| chr1 55937638 55945891 +
2 domain predictions
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Lj1g3v4695520.3
n.a. PREDICTED: protein ROS1-like [Glycine max] gi|356503779|ref|XP_003520681.1| chr1 55939257 55947872 +
2 domain predictions
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Lj3g3v2389760.1
n.a. PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1| chr3 29757564 29761182 +
2 domain predictions
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Lj3g3v2389760.2
n.a. PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502157006|ref|XP_004510726.1| chr3 29757564 29761182 +
2 domain predictions
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Lj3g3v2389760.3
n.a. PREDICTED: A/G-specific adenine DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502157003|ref|XP_004510725.1| chr3 29757564 29761182 +
2 domain predictions
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Lj3g3v3302770.1
n.a. PREDICTED: endonuclease III-like protein 1-like [Cicer arietinum] gi|502148937|ref|XP_004507328.1| chr3 40341771 40346884 -
2 domain predictions
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Lj5g3v2298120.1
n.a. PREDICTED: DNA-3-methyladenine glycosylase 1-like isoform X1 [Cicer arietinum] gi|502131517|ref|XP_004501010.1| chr5 33864181 33868375 +
2 domain predictions
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LotjaGi1g1v0263300.1
n.a. N-glycosylase/DNA lyase; TAIR: AT1G21710.1 8-oxoguanine-DNA glycosylase 1; Swiss-Prot: sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1; TrEMBL-Plants: tr|A0A0S3RDM0|A0A0S3RDM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263300 LjG1.1_chr1 64491146 64504718 -
2 domain predictions
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LotjaGi1g1v0679900.1
n.a. DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900 LjG1.1_chr1 124712102 124726598 -
2 domain predictions
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LotjaGi1g1v0679900.2
n.a. DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900 LjG1.1_chr1 124712102 124726598 -
2 domain predictions
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LotjaGi1g1v0679900.3
n.a. DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900 LjG1.1_chr1 124712923 124723629 -
2 domain predictions
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LotjaGi2g1v0156400_LC.10
n.a. DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55546998 55564317 -
2 domain predictions
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LotjaGi2g1v0156400_LC.26
n.a. DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55550389 55564036 -
2 domain predictions
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LotjaGi2g1v0156400_LC.27
n.a. DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55550389 55564036 -
2 domain predictions
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LotjaGi2g1v0156400_LC.31
n.a. DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55550554 55563642 -
2 domain predictions
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LotjaGi2g1v0156400_LC.34
n.a. Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55554838 55562476 -
2 domain predictions
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LotjaGi2g1v0156400_LC.37
n.a. Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q9SR66|DML2_ARATH DEMETER-like protein 2; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55554940 55562476 -
2 domain predictions
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LotjaGi2g1v0156400_LC.6
n.a. Transcriptional activator DEMETER; TAIR: AT3G10010.1 demeter-like 2; Swiss-Prot: sp|Q9SR66|DML2_ARATH DEMETER-like protein 2; TrEMBL-Plants: tr|A0A0B2NV47|A0A0B2NV47_GLYSO Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55546998 55564317 -
2 domain predictions
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LotjaGi2g1v0156400_LC.9
n.a. DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A151RHD0|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC LjG1.1_chr2 55546998 55564317 -
2 domain predictions
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LotjaGi3g1v0391200.1
n.a. A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|K7MEX7|K7MEX7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200 LjG1.1_chr3 78934063 78938115 +
2 domain predictions
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LotjaGi3g1v0391200.2
n.a. A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|K7KZX6|K7KZX6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200 LjG1.1_chr3 78934063 78938115 +
2 domain predictions
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LotjaGi3g1v0391200.3
n.a. A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|A0A0R0J018|A0A0R0J018_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200 LjG1.1_chr3 78934092 78938083 +
2 domain predictions
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LotjaGi3g1v0497800.1
n.a. Endonuclease III homolog; TAIR: AT2G31450.2 DNA glycosylase superfamily protein; Swiss-Prot: sp|Q9SIC4|NTH1_ARATH Endonuclease III homolog 1, chloroplastic; TrEMBL-Plants: tr|A0A0L9V790|A0A0L9V790_PHAAN Endonuclease III homolog; Found in the gene: LotjaGi3g1v0497800 LjG1.1_chr3 91646305 91651603 -
2 domain predictions
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LotjaGi4g1v0237800.1
n.a. DNA glycosylase; TAIR: AT3G47830.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830; TrEMBL-Plants: tr|A0A151QT39|A0A151QT39_CAJCA Protein ROS1; Found in the gene: LotjaGi4g1v0237800 LjG1.1_chr4 55366302 55369374 +
2 domain predictions
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LotjaGi5g1v0090900_LC.1
n.a. DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|K7LHS4|K7LHS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0090900_LC LjG1.1_chr5 15830480 15845980 +
2 domain predictions
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